Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30582
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 168 3e-42
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 168 3e-42
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 168 4e-42
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 168 4e-42
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 168 4e-42
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 162 2e-40
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 159 1e-39
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 79 2e-15
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 79 2e-15
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 79 2e-15
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 79 2e-15
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 79 4e-15
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 79 4e-15
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 79 4e-15
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 78 5e-15
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 78 5e-15
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 42 4e-04
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 42 4e-04
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 36 0.036
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.78
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.4
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 30 1.8
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 29 4.2
At2g41120.1 68415.m05079 expressed protein 28 5.5
At2g15020.1 68415.m01710 expressed protein and genefinder 28 5.5
At1g62870.1 68414.m07099 expressed protein 28 5.5
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 28 7.3
At2g25800.1 68415.m03096 expressed protein 28 7.3
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 27 9.6
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 168 bits (409), Expect = 3e-42
Identities = 73/84 (86%), Positives = 80/84 (95%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
SN TA+AE ++R+DHKFDLMYAKR
Sbjct: 379 SNNTAVAEVFSRIDHKFDLMYAKR 402
Score = 156 bits (378), Expect = 2e-38
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 181
I+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV EITN
Sbjct: 234 IISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITN 293
Query: 182 ACFEPANQMVKCDPRHGKYMACCM 253
A FEPA+ M KCDPRHGKYMACC+
Sbjct: 294 AVFEPASMMAKCDPRHGKYMACCL 317
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 510 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 614
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 168 bits (409), Expect = 3e-42
Identities = 73/84 (86%), Positives = 80/84 (95%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
SN TA+AE ++R+DHKFDLMYAKR
Sbjct: 379 SNNTAVAEVFSRIDHKFDLMYAKR 402
Score = 156 bits (378), Expect = 2e-38
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 181
I+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV EITN
Sbjct: 234 IISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITN 293
Query: 182 ACFEPANQMVKCDPRHGKYMACCM 253
A FEPA+ M KCDPRHGKYMACC+
Sbjct: 294 AVFEPASMMAKCDPRHGKYMACCL 317
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 510 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 614
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 168 bits (408), Expect = 4e-42
Identities = 73/84 (86%), Positives = 81/84 (96%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
SN+T++AE ++R+DHKFDLMYAKR
Sbjct: 379 SNSTSVAEVFSRIDHKFDLMYAKR 402
Score = 159 bits (387), Expect = 1e-39
Identities = 70/84 (83%), Positives = 79/84 (94%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 181
++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN
Sbjct: 234 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITN 293
Query: 182 ACFEPANQMVKCDPRHGKYMACCM 253
+ FEPA+ M KCDPRHGKYMACC+
Sbjct: 294 SAFEPASMMAKCDPRHGKYMACCL 317
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 510 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 614
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 168 bits (408), Expect = 4e-42
Identities = 73/84 (86%), Positives = 81/84 (96%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
SN+T++AE ++R+DHKFDLMYAKR
Sbjct: 379 SNSTSVAEVFSRIDHKFDLMYAKR 402
Score = 159 bits (387), Expect = 1e-39
Identities = 70/84 (83%), Positives = 79/84 (94%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 181
++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN
Sbjct: 234 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITN 293
Query: 182 ACFEPANQMVKCDPRHGKYMACCM 253
+ FEPA+ M KCDPRHGKYMACC+
Sbjct: 294 SAFEPASMMAKCDPRHGKYMACCL 317
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 510 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 614
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 168 bits (408), Expect = 4e-42
Identities = 73/84 (86%), Positives = 81/84 (96%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
SN+T++AE ++R+DHKFDLMYAKR
Sbjct: 379 SNSTSVAEVFSRIDHKFDLMYAKR 402
Score = 159 bits (387), Expect = 1e-39
Identities = 70/84 (83%), Positives = 79/84 (94%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 181
++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN
Sbjct: 234 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITN 293
Query: 182 ACFEPANQMVKCDPRHGKYMACCM 253
+ FEPA+ M KCDPRHGKYMACC+
Sbjct: 294 SAFEPASMMAKCDPRHGKYMACCL 317
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +3
Query: 510 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 614
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 162 bits (393), Expect = 2e-40
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
YRGDVVPKDVN A+A IK KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQRAVCM+
Sbjct: 319 YRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMI 378
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
SN TA+AE ++R+DHKFDLMY+KR
Sbjct: 379 SNNTAVAEVFSRIDHKFDLMYSKR 402
Score = 149 bits (360), Expect = 2e-36
Identities = 64/83 (77%), Positives = 73/83 (87%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYHEQ SV EIT +
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTS 294
Query: 185 CFEPANQMVKCDPRHGKYMACCM 253
FEP+N M KCDPRHGKYMACC+
Sbjct: 295 VFEPSNMMAKCDPRHGKYMACCL 317
Score = 75.4 bits (177), Expect = 4e-14
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +3
Query: 510 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 608
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 159 bits (387), Expect = 1e-39
Identities = 70/84 (83%), Positives = 79/84 (94%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 181
++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN
Sbjct: 234 VISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITN 293
Query: 182 ACFEPANQMVKCDPRHGKYMACCM 253
+ FEPA+ M KCDPRHGKYMACC+
Sbjct: 294 SAFEPASMMAKCDPRHGKYMACCL 317
Score = 140 bits (338), Expect = 1e-33
Identities = 61/68 (89%), Positives = 66/68 (97%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+
Sbjct: 319 YRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMI 378
Query: 436 SNTTAIAE 459
SN+T++AE
Sbjct: 379 SNSTSVAE 386
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ + I+ K + FV+W P K + + P G ++ A +
Sbjct: 317 FRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSV----CDIAPKG----LKMASTFI 368
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRK 392
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/84 (23%), Positives = 42/84 (50%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ + ++ K + FV+W P K + + P G ++ A +
Sbjct: 317 FRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSV----CDIAPTG----LKMASTFI 368
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRK 392
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 234 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQ 293
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 294 MWDAKNMMCAADPRHGRYL 312
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ I ++ K + FV+W P K + PPT ++ A +
Sbjct: 318 FRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GIKMASTFV 369
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 370 GNSTSIQEMFRRVSEQFTAMFRRK 393
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 234 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQ 293
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 294 MWDSKNMMCAADPRHGRYL 312
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ I I+ K + FV+W P K + PP ++ A +
Sbjct: 318 FRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMAATFV 369
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 370 GNSTSIQEMFRRVSEQFTAMFRRK 393
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 293 MWDSKNMMCAADPRHGRYL 311
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRK 392
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 293 MWDSKNMMCAADPRHGRYL 311
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRK 392
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRK 392
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFI 368
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRK 392
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +2
Query: 5 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQ 292
Query: 185 CFEPANQMVKCDPRHGKYM 241
++ N M DPRHG+Y+
Sbjct: 293 MWDSKNMMCAADPRHGRYL 311
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 498 RQACFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 602
R+ F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = +1
Query: 256 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 435
+RG + K+V+ + ++ K + FV+W P K + + P G + A +
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV----CDIAPRG----LSMASTFI 368
Query: 436 SNTTAIAEAWARLDHKFDLMYAKR 507
N+T+I E + R+ +F M+ ++
Sbjct: 369 GNSTSIQEMFRRVSEQFTAMFRRK 392
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEIT 178
++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++
Sbjct: 235 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVM 294
Query: 179 NACFEPANQMVKCDPRH 229
+ N MV R+
Sbjct: 295 RRLLQTKNIMVSSYARN 311
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/88 (22%), Positives = 47/88 (53%)
Frame = +1
Query: 244 LLYAYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 423
+L +G+V P V+ ++ I+ ++ + F+DW P +V ++ + P V ++ +
Sbjct: 322 ILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL--- 378
Query: 424 VCMLSNTTAIAEAWARLDHKFDLMYAKR 507
ML++ T+I ++R ++D + K+
Sbjct: 379 --MLASHTSIRHLFSRCLSQYDKLRKKQ 404
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEIT 178
++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++
Sbjct: 235 VMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVM 294
Query: 179 NACFEPANQMVKCDPRH 229
+ N MV R+
Sbjct: 295 RRLLQTKNIMVSSYARN 311
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/88 (20%), Positives = 47/88 (53%)
Frame = +1
Query: 244 LLYAYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 423
+L +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ +
Sbjct: 322 ILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL--- 378
Query: 424 VCMLSNTTAIAEAWARLDHKFDLMYAKR 507
ML++ T+I +++ ++D + K+
Sbjct: 379 --MLASHTSIRHLFSKCLSQYDKLRKKQ 404
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 10 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLPTGHVRASHLCREG 144
L C RRR GP RV + L PP P+ + V + L REG
Sbjct: 97 LQRCIIARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREG 141
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 44 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 184
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 375 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 271
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 241 GLLYAYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 402
G L +G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 302 GSLPTLQGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK4) identical to MAP kinase kinase
4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
gi_13265419
Length = 366
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 660 HWLSTLRLLHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRRTSARNT 505
H++S P +RS +LL++P R P P L + LPPP P +S+ T
Sbjct: 309 HFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSSSSSPTT 366
>At2g41120.1 68415.m05079 expressed protein
Length = 261
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 277 WVRRHHGTHTASHVLAMTGVAFHHLV-GGLEACVCDLGDG 161
W++ T T H + V FHHL + + +LG+G
Sbjct: 103 WIQAEEPTRTLIHGILQCAVGFHHLFNNNHKGAMMELGEG 142
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 38 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 214
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 69 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 200
R + C S S+ SRT L R P NS P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -2
Query: 609 CRLLRNPSRGQPGPHGLRRTLPPPYPHRRTSARNTLGVH 493
CR NP+ G H LR PPP P SA T G H
Sbjct: 79 CRPPSNPATTNSGHHQLRPPPPPPPP---LSAITTTGHH 114
>At2g25800.1 68415.m03096 expressed protein
Length = 996
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 527 DVPVHETRL-AYMRSNLWSRRAQASAMAVVLDNMQTA 420
+V V TR+ Y+RS+L + AQAS VV D M+ A
Sbjct: 440 EVDVARTRIETYIRSSLRTSFAQASICIVVEDRMEKA 476
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 54 TSPSSR-LTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 230
T P+S TW + + ++S T +SLP+ +N + + A+SPP++ PV
Sbjct: 82 TKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVP 141
Query: 231 AS 236
S
Sbjct: 142 VS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,797
Number of Sequences: 28952
Number of extensions: 398768
Number of successful extensions: 1517
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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