Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30581
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 116 3e-27
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 116 5e-27
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 30 0.41
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.2
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 27 3.9
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.7
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 6.7
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 8.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 8.9
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 8.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.9
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 116 bits (280), Expect = 3e-27
Identities = 56/125 (44%), Positives = 83/125 (66%)
Frame = +3
Query: 258 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAI 437
+T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAI
Sbjct: 105 ITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAI 164
Query: 438 RKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVFE 617
R+KM ++I ++ +RE+V KL + R R I+PL++V +RK K + P +
Sbjct: 165 RQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHD 224
Query: 618 ISKLM 632
KL+
Sbjct: 225 AQKLL 229
Score = 104 bits (249), Expect = 2e-23
Identities = 48/86 (55%), Positives = 65/86 (75%)
Frame = +1
Query: 1 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D E
Sbjct: 21 VDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEE 78
Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGMT 258
+FRK +L E +QG++ L +F+G++
Sbjct: 79 HAFRKVKLRVEDIQGKSCLTSFNGLS 104
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 116 bits (278), Expect = 5e-27
Identities = 55/134 (41%), Positives = 82/134 (61%)
Frame = +3
Query: 231 CALQLPRHDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 410
C D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT Y
Sbjct: 96 CLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTY 155
Query: 411 AQHTQVRAIRKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK* 590
AQ +Q+RAI +KM ++I ++E+V KL + R + IYPL++V +RK
Sbjct: 156 AQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKV 215
Query: 591 KC*RGPVFEISKLM 632
K + P + KL+
Sbjct: 216 KILKAPKHDAQKLL 229
Score = 107 bits (258), Expect = 1e-24
Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Frame = +1
Query: 1 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D E
Sbjct: 21 VDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEE 78
Query: 181 RSFRKFRLIAEYVQGRNVLCNFHG--MTSQPISS 276
SFRK +L E +QG++ L +F+G MTS + S
Sbjct: 79 HSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 29.9 bits (64), Expect = 0.41
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 509 IPDSIAKDIEKACHGHLPSA 568
IP IAK+I K +GHLPS+
Sbjct: 234 IPQEIAKEITKELYGHLPSS 253
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = -2
Query: 296 PFFNHPPELIGCEVMPWKLQSTLRPCTYSAINLN------LRKDLSA-SVSACRSARETS 138
P+ H C WK ++L P S ++ + L +D S VS R + ++
Sbjct: 179 PYTEHKRRRADCVFFTWKDPNSLSPTKLSFLSTSNIDPEDLTEDNSILPVSPTRDSTKSH 238
Query: 137 KTLPFNPS 114
KTL F+PS
Sbjct: 239 KTLNFSPS 246
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 363 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRR 542
+ + NKDSL + + Q R +KM + I + + E RE N +P + RR
Sbjct: 411 VTYDNKDSLKNMNSKLVDYFQWREQYRKMSKSIKKPEPSKE-REASNTTSRKGVPPSKRR 469
Query: 543 PAMG 554
G
Sbjct: 470 RVRG 473
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 359 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 451
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 252 HDLTTDKLRWMVKKWQTLIEANI-DVKTTDGY 344
HD ++ +RWMV K Q + +I + T + Y
Sbjct: 392 HDSASEAIRWMVNKGQLVRSGSIYQIATVEEY 423
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 661 SNRPSPVKVPINFEISKTGPLQH 593
SN PS K+P NF +++ P H
Sbjct: 401 SNVPSTQKLPSNFRVTQGAPPSH 423
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 276 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 413
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 366 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 494
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 255 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 353
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,879
Number of Sequences: 5004
Number of extensions: 72894
Number of successful extensions: 219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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