Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30581
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 134 5e-32
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 134 1e-31
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 132 3e-31
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 31 1.3
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 30 2.3
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 29 3.1
04_03_0377 - 15121777-15122406 29 5.3
07_03_0808 - 21668100-21669092 28 7.1
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 28 7.1
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 28 9.3
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 9.3
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 9.3
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 134 bits (325), Expect = 5e-32
Identities = 61/124 (49%), Positives = 89/124 (71%)
Frame = +3
Query: 261 TTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIR 440
TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIR 165
Query: 441 KKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVFEI 620
+KM EI+ ++ +L+E+V+K + + + I+PL++V +RK K + P F++
Sbjct: 166 RKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDL 225
Query: 621 SKLM 632
KLM
Sbjct: 226 GKLM 229
Score = 126 bits (303), Expect = 3e-29
Identities = 61/86 (70%), Positives = 72/86 (83%)
Frame = +1
Query: 1 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGMT 258
+++RK RL AE VQG+NVL NF GM+
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMS 104
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 134 bits (323), Expect = 1e-31
Identities = 69/162 (42%), Positives = 100/162 (61%), Gaps = 3/162 (1%)
Frame = +3
Query: 261 TTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIR 440
TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIR 165
Query: 441 KKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVFEI 620
+KM EI+ + +L+E+V+K + + + I+PL++V IRK K + P F++
Sbjct: 166 RKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDL 225
Query: 621 SKLM---GTFTGEGRLEARGKAGDKSETAGGLTKPSRSKRSV 737
KLM G + + ++ A AG L S +R V
Sbjct: 226 GKLMEVHGDYKEDVGMKLDRPAETDEAVAGELPFTSAKRREV 267
Score = 127 bits (306), Expect = 1e-29
Identities = 62/86 (72%), Positives = 73/86 (84%)
Frame = +1
Query: 1 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGMT 258
+++RK RL AE VQGRNVL NF GM+
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMS 104
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 132 bits (319), Expect = 3e-31
Identities = 60/124 (48%), Positives = 88/124 (70%)
Frame = +3
Query: 261 TTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIR 440
TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIR 165
Query: 441 KKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVFEI 620
+KM EI+ ++ +L+E+V+K + + + I+PL++V +RK K + P F++
Sbjct: 166 RKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDL 225
Query: 621 SKLM 632
KLM
Sbjct: 226 GKLM 229
Score = 126 bits (304), Expect = 2e-29
Identities = 62/86 (72%), Positives = 72/86 (83%)
Frame = +1
Query: 1 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGMT 258
+++RK RL AE VQG+NVL NF GM+
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMS 104
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 636 FPSTSRSRKRGLFNTFTFGCKHRAEGRCPWQAFSMSLAMESG 511
FP+++ SR+ F T + A R W++F+ SL +E G
Sbjct: 196 FPASTNSRRCRKFTTMAYPVSPIAGRRSNWRSFAASLNLEDG 237
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 692 FRLVSGFPPCFQPPFARESSHQLRDLENGASSTLSLSDANIAQRVDAHG 546
+R + PP +PP + R L++G T++L+DA++ + G
Sbjct: 218 WRAIGYSPPTDEPPAEEHTEATKRPLDDGVVETINLTDASLPSSLAEKG 266
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 688 DLSPAFPLASNRPSPVKVPINFEISKTGPLQHFHF 584
D++P+ P RP P + + + +S+ G L+H HF
Sbjct: 30 DMAPSRP-PRPRPGPARAAVVYYLSRNGHLEHPHF 63
>04_03_0377 - 15121777-15122406
Length = 209
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 160 QADTDAERSFRKFRLIAEYVQGRNVLCNFHGMTSQPISSGGWLKNGRL 303
+ + DA+ S K LI E + G + G+T + I+S GW+ N RL
Sbjct: 99 KVEHDADESETKLLLI-EAINGHRP--SLEGLTIEQITSLGWMANARL 143
>07_03_0808 - 21668100-21669092
Length = 330
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 626 LRDL-ENGASSTLS-LSDANIAQRVDAHGRPSRCPWQWSQE*LVHHLPEFRV 477
LRDL E+ + TL L D + A R R R W+W +HH P R+
Sbjct: 81 LRDLPEDILAGTLGCLRDTSAAARTSLLSRRWRHVWKWVSGLFLHHYPAPRL 132
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -2
Query: 683 VSGFPP--CFQPPFARESSHQLRDLENG---ASSTLSLSDANIAQRVD 555
+SG PP C + L LEN ST+ S+ANI +RVD
Sbjct: 692 LSGLPPSLCRSSIYEERVMRNLEQLENAYYSMRSTIDTSEANIIKRVD 739
>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 530 DIEKACHGHLPSARCLHPKV-KVLKRPRFR 616
D+E+A H HL S + L K K+ K P+FR
Sbjct: 992 DMEEAVHAHLASKKFLEKKFPKLPKFPKFR 1021
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 144 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 52
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 709 VSPPAVSDLSPAFPLASNRPSPVKVPINFEISKTGPLQ 596
+ PP D P+ P + P PV P I++TG LQ
Sbjct: 1114 LGPPLPDDRPPSPPPLPSSPPPVPPPPPAPITQTGQLQ 1151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,855,918
Number of Sequences: 37544
Number of extensions: 518671
Number of successful extensions: 1696
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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