Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30581
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 130 1e-30
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057) 30 2.4
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4) 29 4.1
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_8633| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 130 bits (314), Expect = 1e-30
Identities = 67/132 (50%), Positives = 88/132 (66%)
Frame = +3
Query: 300 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 479
TLIEA +DVKTTDGY+LR+FCIGFT + +KT YA+HTQ++AIRKKM +IITR+V+
Sbjct: 2 TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61
Query: 480 SELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVFEISKLMGTFTGEGRL 659
++L+EVVNKL + + + IYPL DV IRK K + P F+I KLM GE
Sbjct: 62 NDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLM-EMHGEASS 120
Query: 660 EARGKAGDKSET 695
A D++ T
Sbjct: 121 HATTTTTDETGT 132
>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
Length = 643
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +2
Query: 155 IYKLTLTR-KGLSANSD*SPNMCKDVMCSATSTA*PH------NR*AQVDG*KMADSH 307
++KLT+T KGL+ + + N+ KDV + + A P NR A++DG K +D H
Sbjct: 306 VFKLTVTDDKGLTGSGTVAVNVKKDVNQAPVARAGPDVVVHLPNRAAELDGSKSSDDH 363
>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 194 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 15
LRK L S + RE + L FNP E+ +V L + ++ + +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 133 VFEVSLADLQADTDAERSFRKFRLIAEYVQ 222
+F + +D+QA+++ FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205
>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
Length = 272
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 322 SMLASMRVCHFLTIHLSLSVVRS-CRGSCRAHYVLAHI 212
S+++S +CH + +HLS S SC H V+ H+
Sbjct: 98 SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 135
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 322 SMLASMRVCHFLTIHLSLSVVRS-CRGSCRAHYVLAHI 212
S+++S +CH + +HLS S SC H V+ H+
Sbjct: 120 SVISSSCICHIVIVHLSYRHRASVISSSCICHIVIVHL 157
>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = -2
Query: 608 GASSTLSLSDANIAQRVDAHGRPSRCPWQWSQE*LVH-HLPEFRV--SDVA-CNDFTHFL 441
G + +S + + + H P + E V H P+FR +++ C+D HF
Sbjct: 86 GLPNNVSCKNTSYTDNISMHNFPKDRKLRHEWEKFVRKHRPDFRARGDNISLCSD--HFK 143
Query: 440 SDCSDLSVLGVARLALAQGVLIGETNAED 354
+C D L V L + ++ G ED
Sbjct: 144 KECYDXPKLNVGNLKFNRRLIPGSIPTED 172
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 617 LENGASSTLSLSDANIAQRVDAHGRPSRCPW 525
L T+SL+ N+ +++ GRP +CP+
Sbjct: 491 LRGAVRMTVSLAKVNVVHQLEETGRPVQCPY 521
>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 VDPFTRKDWYDVKAPSMFSKRQ 66
V+P+ KDW D SMFS RQ
Sbjct: 99 VEPWRWKDWEDFTQSSMFSGRQ 120
>SB_8633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = -2
Query: 257 VMPWKLQSTLRPCTYSAINLNLRKDLSAS---VSACRSARETSKTLPFNPSEAIFVPWVR 87
VM + + C+Y + RK S V AC + E S LP NP
Sbjct: 9 VMSYNAGTNSSQCSYYEFPVKNRKPYPTSGELVGACVNGEEGSDRLPLNPFMFTLAANNS 68
Query: 86 LTSVVPTCLL 57
S P C+L
Sbjct: 69 AISFAPICVL 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,912,397
Number of Sequences: 59808
Number of extensions: 567845
Number of successful extensions: 1771
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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