Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30581
         (762 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   155   1e-39

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  155 bits (376), Expect = 1e-39
 Identities = 80/147 (54%), Positives = 103/147 (70%)
 Frame = +3

Query: 258 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAI 437
           LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ I
Sbjct: 108 LTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNI 167

Query: 438 RKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVFE 617
           R KM  II R++T+++L+ VV KL    + +   +    +YPL DV IRK K  + P F+
Sbjct: 168 RAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFD 227

Query: 618 ISKLMGTFTGEGRLEARGKAGDKSETA 698
           +S LM    G+G     GKA + S  A
Sbjct: 228 LSSLM-ELHGDG----GGKAAEVSTGA 249



 Score =  150 bits (364), Expect = 4e-38
 Identities = 70/85 (82%), Positives = 76/85 (89%)
 Frame = +1

Query: 1   VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
           VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DAE
Sbjct: 22  VDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAE 81

Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGM 255
           RSFRKF+L+AE V GR+VL NFHGM
Sbjct: 82  RSFRKFKLVAESVNGRDVLTNFHGM 106


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 858,696
Number of Sequences: 2352
Number of extensions: 19122
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)