Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30581
         (762 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   155   6e-38
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   155   6e-38
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   155   6e-38
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   155   6e-38
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   149   3e-36
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   149   4e-36
BT022161-1|AAY51555.1|  542|Drosophila melanogaster IP01358p pro...    29   5.2  
AF395905-1|AAL59599.1|  943|Drosophila melanogaster rotund protein.    29   5.2  
AE014297-593|AAF54032.3|  946|Drosophila melanogaster CG32466-PA...    29   5.2  

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  155 bits (376), Expect = 6e-38
 Identities = 74/126 (58%), Positives = 94/126 (74%)
 Frame = +3

Query: 255 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 434
           DLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR 
Sbjct: 107 DLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRK 166

Query: 435 IRKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVF 614
           IR +M +IIT +V+ ++L+++VNKL L  + +   +    IYPL DV IRK K  + P F
Sbjct: 167 IRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRF 226

Query: 615 EISKLM 632
           ++SKL+
Sbjct: 227 DVSKLL 232



 Score =  149 bits (362), Expect = 3e-36
 Identities = 70/85 (82%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
           VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D E
Sbjct: 22  VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPE 81

Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGM 255
           RSFRKFRLIAE VQ RNVLCNFHGM
Sbjct: 82  RSFRKFRLIAEDVQDRNVLCNFHGM 106


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  155 bits (376), Expect = 6e-38
 Identities = 74/126 (58%), Positives = 94/126 (74%)
 Frame = +3

Query: 255 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 434
           DLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR 
Sbjct: 2   DLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRK 61

Query: 435 IRKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVF 614
           IR +M +IIT +V+ ++L+++VNKL L  + +   +    IYPL DV IRK K  + P F
Sbjct: 62  IRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRF 121

Query: 615 EISKLM 632
           ++SKL+
Sbjct: 122 DVSKLL 127


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  155 bits (376), Expect = 6e-38
 Identities = 74/126 (58%), Positives = 94/126 (74%)
 Frame = +3

Query: 255 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 434
           DLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR 
Sbjct: 57  DLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRK 116

Query: 435 IRKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVF 614
           IR +M +IIT +V+ ++L+++VNKL L  + +   +    IYPL DV IRK K  + P F
Sbjct: 117 IRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRF 176

Query: 615 EISKLM 632
           ++SKL+
Sbjct: 177 DVSKLL 182



 Score = 79.8 bits (188), Expect = 4e-15
 Identities = 38/43 (88%), Positives = 38/43 (88%)
 Frame = +1

Query: 127 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGM 255
           GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGM
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGM 56


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  155 bits (376), Expect = 6e-38
 Identities = 74/126 (58%), Positives = 94/126 (74%)
 Frame = +3

Query: 255 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 434
           DLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR 
Sbjct: 107 DLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRK 166

Query: 435 IRKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPVF 614
           IR +M +IIT +V+ ++L+++VNKL L  + +   +    IYPL DV IRK K  + P F
Sbjct: 167 IRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRF 226

Query: 615 EISKLM 632
           ++SKL+
Sbjct: 227 DVSKLL 232



 Score =  149 bits (362), Expect = 3e-36
 Identities = 70/85 (82%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
           VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D E
Sbjct: 22  VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPE 81

Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGM 255
           RSFRKFRLIAE VQ RNVLCNFHGM
Sbjct: 82  RSFRKFRLIAEDVQDRNVLCNFHGM 106


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  149 bits (362), Expect = 3e-36
 Identities = 70/85 (82%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 180
           VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D E
Sbjct: 22  VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPE 81

Query: 181 RSFRKFRLIAEYVQGRNVLCNFHGM 255
           RSFRKFRLIAE VQ RNVLCNFHGM
Sbjct: 82  RSFRKFRLIAEDVQDRNVLCNFHGM 106



 Score =  122 bits (295), Expect = 4e-28
 Identities = 57/96 (59%), Positives = 74/96 (77%)
 Frame = +3

Query: 255 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 434
           DLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR 
Sbjct: 107 DLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRK 166

Query: 435 IRKKMCEIITRDVTNSELREVVNKLFLTPLPRTSRR 542
           IR +M +IIT +V+ ++L++++     T L + S++
Sbjct: 167 IRARMTDIITNEVSGADLKQLLTSWPWTRLRKISKK 202


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  149 bits (361), Expect = 4e-36
 Identities = 73/127 (57%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
 Frame = +3

Query: 255 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 434
           DLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYA  +QVR 
Sbjct: 108 DLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRK 167

Query: 435 IRK-KMCEIITRDVTNSELREVVNKLFLTPLPRTSRRPAMGIYPLRDVCIRK*KC*RGPV 611
           IR  +M +IIT +V+ ++L+++VNKL L  + +   +    IYPL DV IRK K  + P 
Sbjct: 168 IRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 227

Query: 612 FEISKLM 632
           F++SKL+
Sbjct: 228 FDVSKLL 234



 Score =  140 bits (338), Expect = 3e-33
 Identities = 67/86 (77%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTDA 177
           VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D 
Sbjct: 22  VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDIDP 81

Query: 178 ERSFRKFRLIAEYVQGRNVLCNFHGM 255
           E SFRKFRLIAE VQ RNVLCNFHGM
Sbjct: 82  EHSFRKFRLIAEDVQDRNVLCNFHGM 107


>BT022161-1|AAY51555.1|  542|Drosophila melanogaster IP01358p
           protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 718 EGFVSPPAVSDLSPAFPLASNRPSPVKVPINFEISKTG 605
           +G V  PA      A P   N P PV VP++  +  TG
Sbjct: 47  DGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTG 84


>AF395905-1|AAL59599.1|  943|Drosophila melanogaster rotund protein.
          Length = 943

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 718 EGFVSPPAVSDLSPAFPLASNRPSPVKVPINFEISKTG 605
           +G V  PA      A P   N P PV VP++  +  TG
Sbjct: 45  DGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTG 82


>AE014297-593|AAF54032.3|  946|Drosophila melanogaster CG32466-PA,
           isoform A protein.
          Length = 946

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 718 EGFVSPPAVSDLSPAFPLASNRPSPVKVPINFEISKTG 605
           +G V  PA      A P   N P PV VP++  +  TG
Sbjct: 47  DGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHTG 84


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,241,671
Number of Sequences: 53049
Number of extensions: 847735
Number of successful extensions: 2718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2711
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)