Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30581
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   9.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   9.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   9.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.4  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 520 GVRNNLFTTSLSSELVTSRVM 458
           G+ N+L  T+LSS LV SRV+
Sbjct: 608 GLGNSLAITALSSILVLSRVI 628


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 36  QGSVYVQQEASRHH--ACQPYPGNENCFG 116
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 200 LNLRKDLSASVSACRSARE 144
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 582 GCKHRAEGRC 553
           GC  R EGRC
Sbjct: 132 GCGERTEGRC 141


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 582 GCKHRAEGRC 553
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 582 GCKHRAEGRC 553
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 681 DKSETAGGLTKPSRSKRSVLN*ING 755
           + S   GG T P+ + R  ++ ING
Sbjct: 573 NSSNDEGGKTSPNSAVRKCMSPING 597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,609
Number of Sequences: 438
Number of extensions: 4979
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)