Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30580
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    30   1.9  
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    30   2.5  
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    29   3.2  
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940...    29   3.2  
11_04_0208 - 14871412-14872198,14872932-14873206,14873819-14873851     29   5.7  
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727...    29   5.7  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    28   9.9  
03_01_0639 - 4678993-4679034,4679880-4679945,4680040-4680150,468...    28   9.9  
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622     28   9.9  

>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 403  EKELFCNGKPDCKDESDENACTVELDPNRAP 495
            +++L C+G  D KD S+  AC   +D N  P
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVP 1032


>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
 Frame = +1

Query: 277 DWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKL------ACGSGDCIE-----KELFCN 423
           D  +N  N   I      L  +  DEP CP  +L      ACGS +CI+         C 
Sbjct: 216 DLLSNKINASTIGASMAYLSTVIADEPNCPTARLDNKTQFACGSNNCIDVANGGYSCACP 275

Query: 424 GKPDCKDESDENACTVELDPNRAPDC 501
           G  D  +    + C  E +P    +C
Sbjct: 276 GNSDDGNPYLLDDCKQEFNPTPKKNC 301


>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
            14059378-14059539,14059642-14059768,14059869-14060200,
            14060289-14061083,14061379-14061714,14061791-14062730,
            14063338-14063588
          Length = 1633

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 494  GALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIG 333
            G +    ST    SS S  +S L  + +S   +  LP+ +LP G + S V  IG
Sbjct: 1052 GEMHQEPSTCPQCSSGSLRKSLLSREGHSMDTEIILPEIDLPVGMVDSFVHDIG 1105


>08_01_0947 +
           9399366-9399568,9399683-9399855,9400745-9401130,
           9401791-9402090,9402177-9402266,9403213-9403336,
           9403452-9403615,9404572-9404802
          Length = 556

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 162 RRTAAMSSGATRA*RTAS-PGSPQCAAPAVSPRYRP 266
           RR A+ S+ A R  R AS P SP+CA     P + P
Sbjct: 45  RRAASASASAARRRRGASLPCSPRCALETAGPGFDP 80


>11_04_0208 - 14871412-14872198,14872932-14873206,14873819-14873851
          Length = 364

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = -3

Query: 588 EVLDLVQFHLGYVYRQQNRNSQVGRTGRITVRRSIWVQFDSASIFIGFIFAVWFTITEQF 409
           EVL L++ HL  + R  +RN        + ++R  + +  SASI  G+      ++T + 
Sbjct: 166 EVLGLIREHLTSIIRWVHRNGPKINRSTLRIKRMQFSRIYSASIMYGYFLK---SVTTRH 222

Query: 408 FFNAISAATSQF 373
               I A + +F
Sbjct: 223 RLELILAQSQEF 234


>01_07_0083 +
           40970890-40971015,40971886-40971994,40972679-40972790,
           40972944-40973100,40973609-40973761,40974143-40974292,
           40974803-40974999,40975446-40975473
          Length = 343

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -1

Query: 638 IDVVNIHS-TVKCNSNHLRYLIWF--NSTWDTCTVSRTETVR*DALVGSQSGALFGSSST 468
           I+V  I+S T+ C++       WF  NS +  C +   + +     +   SGA+ G ++T
Sbjct: 89  INVYAIYSYTIHCSTQAENICFWFIQNSPYLICVICPEDHLHLSPYLSYVSGAIAGCAAT 148

Query: 467 VQAFSSD 447
           V ++  D
Sbjct: 149 VGSYPFD 155


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = -1

Query: 665 ITVEYLFI*IDVVNIHSTVKCNSNHLRYLIWFNSTWDTC 549
           + V+Y+ I +++V+   T KC SN+ + +++  + + +C
Sbjct: 659 LAVKYIEIVLNMVHTSETAKCISNNSKNILYKTTLFSSC 697


>03_01_0639 -
           4678993-4679034,4679880-4679945,4680040-4680150,
           4680266-4680304,4680394-4680493,4680597-4680712,
           4680897-4681035,4681151-4681222,4681331-4681434,
           4681616-4681867
          Length = 346

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 150 PSHHRRTAAMSSGATRA*RTASPGSPQCAAPAVS 251
           P HHRR++  S+ A  A R   P + QC+A A +
Sbjct: 18  PPHHRRSSVASAAAAAARR--RPRAVQCSATATA 49


>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
          Length = 288

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 196 LVAPDDIAAVLRW*DGNIHRRVYRRTTDQRSA 101
           LV P D+ AV+ W    +H R+  R  ++R+A
Sbjct: 15  LVVPHDLCAVVSWATTLVHARLGPRPAERRTA 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,007,426
Number of Sequences: 37544
Number of extensions: 476171
Number of successful extensions: 1381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)