Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30580
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f...    31   1.2  
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he...    31   1.2  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    30   2.0  
At5g10950.1 68418.m01271 cylicin-related low similarity to SP|Q2...    28   6.2  
At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR...    28   8.3  

>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
           factor (HB-8) identical to HD-zip transcription factor
           (athb-8) (GI:7270235) [Arabidopsis thaliana]
          Length = 833

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 559 GIRVPSAEQKQSGRTHW*DHSQALYLGPVRQCKHFHRIHLCSLVYHYRTILFQCNLRCHK 380
           G+R P A  +      W  HS   YLG V   K  H   L   ++H+   +  C+L+   
Sbjct: 679 GLRPPPASPEAHTLARWISHSYRCYLG-VDLLKP-HGTDLLKSLWHHPDAVMCCSLKALS 736

Query: 379 PIY 371
           P++
Sbjct: 737 PVF 739


>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
           organizer protein P17F11 GI:17976973 from [Xenopus
           laevis]; contains a NUDIX hydrolase domain IPR000086
          Length = 311

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 71  SDKMTTELEMSRTLISCATVDPPMNISVSPPKDCRDVVRCDQGLENSVTRLASVRCPGGL 250
           +++M  E    + L+SC +   P  +SV   K    + R D GLE+S++++   R  G  
Sbjct: 5   AEEMNPEGSRYQLLLSCPSGLSPSQVSVDFSKSHDRIPRQDPGLEDSISQVWEQRSQGNS 64

Query: 251 ASISTVKLVIG 283
           +  +  K   G
Sbjct: 65  SLFNGQKFRYG 75


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/48 (45%), Positives = 24/48 (50%)
 Frame = -1

Query: 455 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFS 312
           SSDSSL       NNS S  SPLP +  P  +I SS    G  F G S
Sbjct: 18  SSDSSLNPSSEHGNNSSSSLSPLPSS--PPSRISSST---GTRFSGHS 60


>At5g10950.1 68418.m01271 cylicin-related low similarity to
           SP|Q28092 Cylicin II (Multiple-band polypeptide II) {Bos
           taurus}
          Length = 395

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +1

Query: 76  QDDDGAGDEPNADQLCDGRPADEYFRLTTEGLPRCRQVRPGPREQRHQ 219
           ++ D    E   D++ DG P   + + + EG+   R+   G +E+  +
Sbjct: 331 ENGDNEDGEKAVDEMSDGEPLVSFLKKSPEGIDAKRKKMKGKKEEEEE 378


>At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1129

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 407  KNCSVMVNQTAKM---NPMKMLALSNWTQIERLTVILP 511
            KNC+ + +   +M   NP+K+L LSN +++E  T  LP
Sbjct: 924  KNCNRLRHLPMEMHNLNPLKVLDLSNCSELEVFTSSLP 961


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,370
Number of Sequences: 28952
Number of extensions: 375301
Number of successful extensions: 1029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)