Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30578
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   5.4  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   7.1  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.4  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   9.4  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 78  PHVPRGQDEGERGQHRAVQTPYRGQ 4
           PH+P+ Q     GQ   VQ PY+ Q
Sbjct: 745 PHLPQAQLPSATGQSGVVQQPYQTQ 769


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = -1

Query: 709 WFFTTLNIINKC*VQNLTAKI*IIYILVLTNIYLKYNFSSINFNLICSAVLYVTSLFIRL 530
           W + T   I  C    + A I I++  + T  +L   FSSI F + C ++LY+    + +
Sbjct: 290 WIYFTFKYITTC----IHANIDIVHFYLETP-FLAGIFSSIFFWVWCHSLLYIVPKTLPI 344

Query: 529 HLLSTRCTIKSIL*CI 482
             LS+   +     CI
Sbjct: 345 KPLSSLLFVLISFTCI 360


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 616 IYLKYNFSSINFNLICSAVLYVTSLFIRLHLLSTRCT 506
           IY    F+++NF L+ S VLY  + F+   + + RCT
Sbjct: 5   IYKFAVFAAVNFFLMSSIVLYFNNEFL---MFADRCT 38


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 604 YNFSSINFNLICSAVLYVTSLFIRL 530
           Y FSSI+F ++ S +L+++   +RL
Sbjct: 45  YAFSSIHFEILQSTILFLSRESVRL 69


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 235 TYSHYSGGPRDPNTECTRTLCIII 306
           TY+ YSG P DP    +  +CI +
Sbjct: 491 TYALYSGWPGDPTFRKSNDVCIAL 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,693
Number of Sequences: 5004
Number of extensions: 53745
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)