Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30578
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23860| Best HMM Match : Defensin_3 (HMM E-Value=3.3)                30   2.5  
SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)                     29   5.7  

>SB_23860| Best HMM Match : Defensin_3 (HMM E-Value=3.3)
          Length = 242

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 166 GSRKSLALQPVLIMHPHAPMDMDTYSHYSGGPRDPNTECTRTL 294
           GS + +++   L+ HPH P    T S  SG P   +  C +++
Sbjct: 156 GSLEQISISKQLVNHPHHPRATKTDSRGSGHPEKGSRGCKQSI 198


>SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)
          Length = 477

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
 Frame = +1

Query: 124 EVNNGYVTDATSVSG----SRKSLALQPVLIMHPHAPMDMDTYSHYSGGPRDPNTECTRT 291
           E+N G VTD  ++      S     L+  ++ H   P+D+    +    PR  N   T  
Sbjct: 24  ELNPGPVTDNNNIEDICLYSNGDFTLRYRMLRHGLTPLDVGRGVNIL--PRLQNQTATIK 81

Query: 292 LCI--IINYNSTVKRLKIRPSIVFTAARWHCT 381
           + +  ++ Y S+   L +RP  V  AA W  T
Sbjct: 82  VDLKRMLKYKSSALSLNVRPYKVLQAANWLIT 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,994,603
Number of Sequences: 59808
Number of extensions: 394167
Number of successful extensions: 726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)