Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30578
         (796 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052063-1|AAK93487.1|  265|Drosophila melanogaster LP10272p pro...    94   2e-19
AE014296-387|AAN11506.1|  265|Drosophila melanogaster CG12026-PB...    94   2e-19
AE014296-386|AAF47590.1|  265|Drosophila melanogaster CG12026-PA...    94   2e-19

>AY052063-1|AAK93487.1|  265|Drosophila melanogaster LP10272p
           protein.
          Length = 265

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 50/88 (56%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
 Frame = +1

Query: 4   LAAIGCLDGAVLSALAFILATRHVRLRPDAGYPPPSLYKGEVNNGYVTDATSVSGSRKS- 180
           LA IGC+DG VL+ LAFILATRHVRL+PD  Y   SLYKGE+NN Y+TDA S++GSRKS 
Sbjct: 178 LAIIGCIDGVVLATLAFILATRHVRLQPDPIY-QNSLYKGEINNAYLTDAISLAGSRKSN 236

Query: 181 -----LALQPVLIMHPHAPMDMDTYSHY 249
                L LQP+L++ P     +  +S Y
Sbjct: 237 PRITGLNLQPILLVAPPNEDSISQFSRY 264


>AE014296-387|AAN11506.1|  265|Drosophila melanogaster CG12026-PB,
           isoform B protein.
          Length = 265

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 50/88 (56%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
 Frame = +1

Query: 4   LAAIGCLDGAVLSALAFILATRHVRLRPDAGYPPPSLYKGEVNNGYVTDATSVSGSRKS- 180
           LA IGC+DG VL+ LAFILATRHVRL+PD  Y   SLYKGE+NN Y+TDA S++GSRKS 
Sbjct: 178 LAIIGCIDGVVLATLAFILATRHVRLQPDPIY-QNSLYKGEINNAYLTDAISLAGSRKSN 236

Query: 181 -----LALQPVLIMHPHAPMDMDTYSHY 249
                L LQP+L++ P     +  +S Y
Sbjct: 237 PRITGLNLQPILLVAPPNEDSISQFSRY 264


>AE014296-386|AAF47590.1|  265|Drosophila melanogaster CG12026-PA,
           isoform A protein.
          Length = 265

 Score = 94.3 bits (224), Expect = 2e-19
 Identities = 50/88 (56%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
 Frame = +1

Query: 4   LAAIGCLDGAVLSALAFILATRHVRLRPDAGYPPPSLYKGEVNNGYVTDATSVSGSRKS- 180
           LA IGC+DG VL+ LAFILATRHVRL+PD  Y   SLYKGE+NN Y+TDA S++GSRKS 
Sbjct: 178 LAIIGCIDGVVLATLAFILATRHVRLQPDPIY-QNSLYKGEINNAYLTDAISLAGSRKSN 236

Query: 181 -----LALQPVLIMHPHAPMDMDTYSHY 249
                L LQP+L++ P     +  +S Y
Sbjct: 237 PRITGLNLQPILLVAPPNEDSISQFSRY 264


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,102,805
Number of Sequences: 53049
Number of extensions: 569332
Number of successful extensions: 1475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)