Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30578
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    28   6.7  

>Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +1

Query: 76  RLRPDAGYPPPSLYKGEVNNGYVTDATSVSGSRKSLALQPVLIMHPHAPMDMDTYSHYSG 255
           ++R D+G P P    G+  NG  + +   S S K+   + +       P+D+D   H   
Sbjct: 447 KMRADSGSPNPHQPLGQSANGEKSSSEEESDSEKTDVKKEIKDEIKEEPIDVDISEHV-- 504

Query: 256 GPRDPNTECTRT 291
              DPNT  + T
Sbjct: 505 ---DPNTGSSGT 513


>Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +1

Query: 76  RLRPDAGYPPPSLYKGEVNNGYVTDATSVSGSRKSLALQPVLIMHPHAPMDMDTYSHYSG 255
           ++R D+G P P    G+  NG  + +   S S K+   + +       P+D+D   H   
Sbjct: 447 KMRADSGSPNPHQPLGQSANGEKSSSEEESDSEKTDVKKEIKDEIKEEPIDVDISEHV-- 504

Query: 256 GPRDPNTECTRT 291
              DPNT  + T
Sbjct: 505 ---DPNTGSSGT 513


>Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical
           protein W04D2.6b protein.
          Length = 547

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +1

Query: 76  RLRPDAGYPPPSLYKGEVNNGYVTDATSVSGSRKSLALQPVLIMHPHAPMDMDTYSHYSG 255
           ++R D+G P P    G+  NG  + +   S S K+   + +       P+D+D   H   
Sbjct: 289 KMRADSGSPNPHQPLGQSANGEKSSSEEESDSEKTDVKKEIKDEIKEEPIDVDISEHV-- 346

Query: 256 GPRDPNTECTRT 291
              DPNT  + T
Sbjct: 347 ---DPNTGSSGT 355


>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -1

Query: 583 FNLICSAVLYVTSLFIRLHLLSTRCTIKSIL*CIKTTPVLFLPSLVYRFEIIYKSAISRK 404
           F L+     +V S  +  HLL  RC+I      +  +  + L   VYR+ +I++S  ++K
Sbjct: 72  FYLMIKDGWFVESTELNFHLLVARCSI------VFASNAILLTHFVYRYLVIHESNFTKK 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,894
Number of Sequences: 27780
Number of extensions: 302280
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)