Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30578
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ...    29   4.7  
At1g78110.1 68414.m09103 expressed protein                             28   8.2  

>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
           similar to unknown protein (pir |T04270)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 783 FPLNFKVNFTITHPEDLSVKSI 718
           +PLN K NF   H EDL+ K++
Sbjct: 179 YPLNHKTNFDEDHHEDLNFKNV 200


>At1g78110.1 68414.m09103 expressed protein 
          Length = 342

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 118 KGEVNNGYVTDATSVSGSRKSLALQPVLIMHPHAPMDMDT 237
           +G  ++GY  D      SR  LAL P  I  P  P D  T
Sbjct: 9   RGSSSSGYSADLLVCFPSRTHLALTPKPICSPSRPSDSST 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,862
Number of Sequences: 28952
Number of extensions: 265980
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)