Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30577
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   4.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.5  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.3  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   7.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   9.6  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 24  ISCKICLSPQLINNATKEKQRSDYIITKI*KLREKIISSIVFTDRILYYFD 176
           I   +  +PQ  ++A K+       I+ I +L  K   SI+FT+    YFD
Sbjct: 787 IFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFD 837


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 451 SFKNVLVLSLYLLRCSFSLYLAPRNIYRICINSININWK---VAPFIKMALGNPFQEDSI 621
           S +  L L+ Y     F   L+  ++Y +C+ S N+N+    ++  IK+A+ +    D  
Sbjct: 521 SLEGCLNLAAYYEDAEFPQKLS-NHLYNLCVKSSNVNYARECISLSIKIAVSHKLTNDET 579

Query: 622 P*VFNLINFSL 654
             +  L NF L
Sbjct: 580 YLLKILKNFQL 590


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 71  QRKAEIRLHNYKNIKTQRKNNKFDRIYRSD 160
           +RKA + L +YK +K + KN     +  +D
Sbjct: 211 KRKANVTLGDYKRLKVKNKNPSSQELITAD 240


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 439  FTFLSFKNVLVLSLYLLRCSFSLYLAPRNIYRICINSININ 561
            FTF  +K ++  S+Y L  +  L+ A  +I+    N+ ++N
Sbjct: 1010 FTFDMWKMIICQSMYQLAVTLVLHFAGNSIFHYPSNTADMN 1050


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 68  NQRKAEIRLHNYKNIKTQRKNNKFDRIYRSDSLLF 172
           N  K+ ++  N+ NI    K N F ++ +SD LLF
Sbjct: 128 NSIKSILQFQNFSNIFA--KKNLFPKVSKSDVLLF 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,341
Number of Sequences: 5004
Number of extensions: 67350
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)