Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30577
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    32   0.47 
05_06_0150 - 25994562-25995980                                         29   3.3  
05_07_0296 - 29061900-29061923,29062026-29062440,29062529-290625...    29   4.4  
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936...    28   7.6  

>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 788  PNYQFGSFSNKFLAPDC*GPAKEKFQSSKGLWSFRKIPRFFILVVKLKLIRL 633
            P+  +   S+K+  P+C  P +E   +  G WSF  I  F I+++ L L  L
Sbjct: 848  PSCPYKCISSKYKMPNCYTPLEELIYTFGGPWSFAIILSFTIILLALVLSAL 899


>05_06_0150 - 25994562-25995980
          Length = 472

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 439 IKSYFVTNTYIEMLAIFLHT*YFRRNLSKLPSINKALII 323
           I +YF   +   +LA+F H  Y+ RN   L  ++KA +I
Sbjct: 125 IPAYFFFPSPASVLAVFSHLPYYYRNAPSLREMDKAALI 163


>05_07_0296 -
           29061900-29061923,29062026-29062440,29062529-29062566,
           29062689-29062741,29062851-29063034,29064486-29064669,
           29064761-29064916,29064998-29065173,29065277-29065454,
           29066015-29066421
          Length = 604

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 512 RYKEKEHLNKYKLKTSTFLKDRKVNQILFCYKYLHRNA 399
           R   KEH    K +T+  L+D KV + +  ++ LHR A
Sbjct: 424 RKLSKEHKELIKRRTTEALRDPKVRKKMLGHRQLHRQA 461


>11_04_0370 +
           16891334-16891469,16891556-16891707,16893277-16893639,
           16893832-16893929,16893983-16896029
          Length = 931

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 386 TYVVLSTEFEQTSLHK*STYHLIIFTLTLDSSYM 285
           T + +STEFE+  LHK    HL +  L++ S  M
Sbjct: 835 TVLHMSTEFEEEVLHKLMNLHLKLEELSISSDTM 868


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,276,621
Number of Sequences: 37544
Number of extensions: 348077
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)