Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30577
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical
           protein ZC196.8 protein.
          Length = 271

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -3

Query: 206 SKYVFNTIIAIKIIENPIGKYDRTYYFFSEFLYFCNYVIGSLLFFGCIIY*LWA*TYFAG 27
           S    N   A+ +    + +  + +YFFS  + FC+Y   S+LF   +I    A  +F  
Sbjct: 20  SNLFINIPAALSLFSKEVTQ-SQLFYFFSYLIDFCHY---SILFSNLVISIQRAFVFFLR 75

Query: 26  YWERYF 9
            W   F
Sbjct: 76  NWTNQF 81


>U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical
           protein W03A5.2 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +1

Query: 466 LVLSLY----LLRCSFSLYLAPRNIYRICINSININWKVAPFIK-MALGNPFQEDSIP*V 630
           L++SLY    LL C F+ Y+  +N Y I  N I +   V  ++K   L + F++ +I  +
Sbjct: 11  LLISLYSIICLLVCDFTKYIPAKNAYTIMTNHILLLLSVWMYLKYRELKSFFRQANISII 70

Query: 631 F 633
           F
Sbjct: 71  F 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,509
Number of Sequences: 27780
Number of extensions: 364930
Number of successful extensions: 868
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)