Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30577
(811 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10190.1 68417.m01670 F-box family protein-related contains T... 31 0.68
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 29 4.8
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 29 4.8
At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein ... 29 4.8
At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein ... 29 4.8
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa... 28 6.4
At2g13720.1 68415.m01516 hypothetical protein weak similarity to... 28 8.4
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 8.4
>At4g10190.1 68417.m01670 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 353
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +1
Query: 454 FKNVLVLSLYLLRCSFSLYLAPRNIYRICINSININWKVAPFIKMALGNPFQEDSIP*VF 633
F N SL ++ +F +YL +++ I N +NI ++ +K L N +E I VF
Sbjct: 36 FTNAPRHSLLIMLMTFRVYLVSVDLHTIHNNKVNIISQLR--LKDPLSNFLEEVDICNVF 93
Query: 634 NLINFSLTTKIKNR 675
+ F L T + NR
Sbjct: 94 HCDGFLLCTTVDNR 107
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 637 D*TLRVWNPLEKGSPVPFL*TGLPSNLYLLSLCKFYKCFW 518
D LRVW+P + G+ P S+ +S CK++K W
Sbjct: 334 DPILRVWDPRKPGTSAPVF--QFSSHSSWISACKWHKSSW 371
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 637 D*TLRVWNPLEKGSPVPFL*TGLPSNLYLLSLCKFYKCFW 518
D LRVW+P + G+ P S+ +S CK++K W
Sbjct: 334 DPILRVWDPRKPGTSAPVF--QFSSHSSWISACKWHKSSW 371
>At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 316
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 78 FLWLHYLLTVG-LNIFCRILGTVFFKK 1
F W+HY LT G + F R +G VF K
Sbjct: 34 FQWIHYFLTFGAYDYFLRFVGFVFGSK 60
>At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 397
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 78 FLWLHYLLTVG-LNIFCRILGTVFFKK 1
F W+HY LT G + F R +G VF K
Sbjct: 34 FQWIHYFLTFGAYDYFLRFVGFVFGSK 60
>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1243
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 494 HLNKYKLKTSTFLKDRKVNQILF---C-YKYLHRNACYFFTYVVLSTEFEQTSLHK*STY 327
HL K TS ++ + N I F C Y+ HR A ++F + + F + +K S
Sbjct: 51 HLAKVLRYTSNYVSTTRYNLITFLPKCLYEQFHRVANFYFLVAAILSVFPLSPFNKWSMI 110
Query: 326 HLIIFTLTL 300
+IF + L
Sbjct: 111 APLIFVVGL 119
>At2g13720.1 68415.m01516 hypothetical protein weak similarity to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
{Arabidopsis thaliana}
Length = 223
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 538 KFYKCFWAQDIKKRNILINTNLKQAHF 458
KFYK W Q ++++N+L N + + F
Sbjct: 95 KFYKGVWVQVMREKNVLSNVDQNKRFF 121
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = -3
Query: 230 LKLNKYYQSKYVFNTIIAI----KIIEN---PIGKYDRTYYFFSEFLYFCNYVIGSLLFF 72
L+ +K + Y++ +I K+++N P K + +Y ++ SL FF
Sbjct: 261 LRGSKLRNTDYIYGVVIFTGPDTKVVQNSTDPPSKRSMIERKMDKIIYLMFLMVFSLAFF 320
Query: 71 GCIIY*LWA*TYFA-GYWERYF 9
G +++ +W F G ER++
Sbjct: 321 GSVLFGIWTRDDFQNGVMERWY 342
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,832
Number of Sequences: 28952
Number of extensions: 319261
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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