Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30575
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   1.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.6  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 59  SPFQLNISQQNMDTNTFQKSNTQQSFFGKNVPSVEQSGVYSK 184
           +PF + + QQN   N  Q S  Q      ++    ++ + SK
Sbjct: 6   TPFAMTLGQQNKMYNVIQHSPQQSIIVSGSITQPTKTVIQSK 47


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 128 QSF--FGKNVPSVEQSGVYSKMEELTPDDLEA 217
           QSF    + VP + ++G Y      TP+D++A
Sbjct: 280 QSFPLVSQRVPQLAKNGAYGPDMIYTPEDVKA 311


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 287 QLLHNSWGGAIQVQNLTETCHF 222
           Q L+N + G+ QV    ETC +
Sbjct: 177 QFLYNQFPGSSQVVVKDETCQY 198


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 287 QLLHNSWGGAIQVQNLTETCHF 222
           Q L+N + G+ QV    ETC +
Sbjct: 197 QFLYNQFPGSSQVVVKDETCQY 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,397
Number of Sequences: 336
Number of extensions: 3693
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)