Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30575
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   3.5  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   4.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   4.6  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    26   6.0  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   8.0  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 14  ASANQNLFKQNDTQASP-FQLNISQQNMDTNTFQKSNTQQSFFGKNVPSVEQSGVYSKME 190
           + A   L + ++ QA+P  Q++ S++  +    QKS  ++     ++   E+  +  KME
Sbjct: 74  SEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRI---SILEKEKEDLQRKME 130

Query: 191 ELTPDDLEAFK 223
           ELT + +E  +
Sbjct: 131 ELTVESMEVVR 141


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +1

Query: 376 TGRSHPTYLGCEVVMYSSLKDKILVMLQLRLRPHVSN--WIITFTLLVYVLITA 531
           TGR   TYLG    +  +     L+ L +R   H  N  W  T   +V   ++A
Sbjct: 102 TGRKVETYLGWFAALTGAAAASCLISLSIRDDVHHDNVHWKFTAAFVVLAFVSA 155


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 14  ASANQNLFKQNDTQASPFQLNISQQNMDTNTFQKSNTQQSFFGKNVPSVEQ 166
           A      FK NDT  +    N S QN       K   +QS   + +P+VE+
Sbjct: 110 AKLTDKKFKPNDTSITANVFNPSIQNNTDEENVKPGLKQSQIKEFIPNVEE 160


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 74  NISQQNMDTNTFQKSNTQQSFFGKNVPSVEQSGVYSKMEELTPDDLEAFKSDKFQL 241
           N+S +NM T  F+ ++   +  G  V S + S   ++ E    +DL+      +++
Sbjct: 150 NLSSENMATEIFEINSGLSAQSGTEVGSSQSSPSVNESEPKATEDLDELSPGSYKV 205


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 164 QSGVYSKMEELTPDDLEAFKS 226
           +S + S+M+EL P D+EA KS
Sbjct: 768 KSELSSEMDELDPKDVEALKS 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,565
Number of Sequences: 5004
Number of extensions: 60167
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)