Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30575
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)                   28   6.4  

>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +3

Query: 33  CLNRMTLKLHHFN*ISRSKIWILIPSKSQIHNNHFLEKMCLQ*NRVVFIVKWKSSHQTI 209
           CL R    +HH   +    +  L P  + +H+ + +  +CL       +  W   H TI
Sbjct: 587 CLCRYVASVHHVYVVMSPVVPCLCPYVASVHHVYVIMSLCLCLTGCAVLESWAGIHWTI 645


>SB_14971| Best HMM Match : CHGN (HMM E-Value=0.0084)
          Length = 598

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 370 PCTGRSHPTYLGCEVVMYSSLKDKILVMLQLRLR 471
           P TGR H TY   + V     KD I+ +L L LR
Sbjct: 401 PLTGRFHKTYAIQKAVSSVRDKDSIVFLLDLHLR 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,399,291
Number of Sequences: 59808
Number of extensions: 426906
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)