Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30575
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-5|CAB01145.2|  381|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    28   7.5  
AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z77657-5|CAB01145.2|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.8 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 390 PYLFRL*SSYVL*FEG*DTGYATVET*ASCLKLDY 494
           PYL      YVL ++G DT Y ++ + +S LKL+Y
Sbjct: 204 PYLVEGYVDYVLIYDGPDTTYPSLGSTSSALKLEY 238


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 56  ASPFQLNISQQNMDTNTFQKSNTQQSFFGKNVPSVEQSGVYSKMEELTPDDLE 214
           +S  +LN    ++D + F K + +Q  +  +   V      SKM E+ P D+E
Sbjct: 289 SSDTKLNFGNVHIDLSCFSKYSFEQMRYFFSPNEVYYDEAISKMVEMQPSDIE 341


>AL132860-4|CAB60496.1|  762|Caenorhabditis elegans Hypothetical
           protein Y56A3A.5 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
 Frame = +3

Query: 102 IPSKSQIHNNHFLEKMCLQ*NRVVF-------IVKWKSSHQTIW 212
           +P+  QI      E+MCL+  R+V        +++WKS +QTIW
Sbjct: 699 MPNSVQIVALPNQEEMCLKVMRIVEEISEGVQVLRWKSENQTIW 742


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,090,441
Number of Sequences: 27780
Number of extensions: 328231
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)