Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30575
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 615  IDSQWHIYYHFKDHLDLNT 671
            IDS  H+Y   K  LD+NT
Sbjct: 995  IDSNLHVYAPLKISLDVNT 1013


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 23  NQNLFKQNDTQASPFQLNISQQNMDTNTFQKSN 121
           NQN  KQN  + +  + N ++QN +     K N
Sbjct: 449 NQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQN 481


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 481 SNWIITFTLLVYVLIT 528
           SNWIIT + +++ + T
Sbjct: 31  SNWIITNSFIIFTMQT 46


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 352 SSLLEFWKYSLMSTHNVVYTRFNCY 278
           SSL   +KYS  + +N  Y  +N Y
Sbjct: 316 SSLSNNYKYSNYNNYNNNYNNYNNY 340


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 106 LPKVKYTTIIFW 141
           LPKV+Y T + W
Sbjct: 298 LPKVRYATALDW 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,041
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)