Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30575
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein co...    34   0.11 
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    31   0.74 
At4g23780.1 68417.m03420 hypothetical protein                          28   6.9  
At5g38250.1 68418.m04611 serine/threonine protein kinase, putati...    27   9.2  
At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein co...    27   9.2  

>At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 683

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 128 QSFFGKNVPSVEQSGVYSKMEELTPDDLEAFKSDKFQLGFVPE*HHPK 271
           ++FFG+N   +E      K  + TPDDLE++  D F+ G     HHP+
Sbjct: 634 RAFFGRNRSQLEGGRHAGKYIKYTPDDLESYLPDLFE-GNQLVIHHPR 680


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 388 GTCPCKVTRLPNSSLLEFWKYSLMST 311
           G  P K+  LPN  +LE W+ SLM +
Sbjct: 331 GIIPSKIAELPNLEVLELWQNSLMGS 356


>At4g23780.1 68417.m03420 hypothetical protein
          Length = 148

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 23  NQNLFKQNDTQASPFQLNISQQNMDTNTFQKSNTQQSFFGKN-VPSVEQS-GVYSKMEEL 196
           ++NL K+++T     +L I +  +      K   +++  GK  +   ++  G   KM+E+
Sbjct: 39  HENLVKEHETLIKTLEL-IEKHEITLEDLVKKKQREALVGKEEIEKFDKEIGERKKMQEM 97

Query: 197 TPDDLEAFKS 226
              DLE  KS
Sbjct: 98  LDKDLEYLKS 107


>At5g38250.1 68418.m04611 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 579

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 294 HVSIVT*LLGWCYSGTK 244
           HV+IVT LLG+CY G+K
Sbjct: 325 HVNIVT-LLGFCYEGSK 340


>At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 637

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 128 QSFFGKNVPSVEQSGVYSKMEELTPDDLEAFKSDKF 235
           + F+GK +P++ +      +    PD+LE + SD F
Sbjct: 573 REFYGKYLPTLSKERNIEMLVSFKPDNLENYLSDLF 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,950,163
Number of Sequences: 28952
Number of extensions: 295508
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)