Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30574
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 30 0.33
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 29 0.57
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 29 0.75
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 2.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.0
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 26 4.0
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 4.0
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.3
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 5.3
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 25 9.3
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 25 9.3
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 280 NNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTS 447
+NR Q + + + H K++ T SI+ + SGT+ Y+T +D+ R+ S
Sbjct: 390 DNRHCLTPTQYEEAIELRHQAHLKKNFTPKGSIERLRSGTY-YLTGIDDMFRRSYS 444
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 280 NNRKTTAIHQDNKTFSTQSETH--TKQSHTEHSSIK 381
NNR T++ +TF+ S+ H + S ++HSSI+
Sbjct: 277 NNRSKTSVENQERTFNLTSDVHLDSPTSPSKHSSIE 312
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 28.7 bits (61), Expect = 0.75
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 493 NIIFGFIERTRSPSVNDRNVVRS-STDRKIINKTDIKNVTNVSTSVKKTN 639
N I +I +SP+ + ++ R +TD K++N DI N+ + + S++ +N
Sbjct: 343 NSIDSYISPNQSPNTDVPSLNRDDTTDPKVVNTGDIINMLDDANSIEGSN 392
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 310 DNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPE 489
DNK +S + + + TE+ S+ +K TSE + +SE ++ +PE
Sbjct: 534 DNKVYSYPEDFNATNT-TEYKSVSRASQSQYKATATSEKSHETPSSE-----SLINGKPE 587
Query: 490 FNI 498
F+I
Sbjct: 588 FSI 590
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 578 IFLSVDDRTTLRSFTLGDRVLS 513
++LS D+R L F+ GDR LS
Sbjct: 275 MYLSADERNRLEDFSKGDRGLS 296
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/72 (23%), Positives = 38/72 (52%)
Frame = +1
Query: 325 STQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPEFNIIF 504
ST +++ TK S + SS K+ S +++ + +T+E N+ S ++ + +I+F
Sbjct: 188 STMTKSSTKTSKKK-SSKKNSKSESNQDSSNDRSSTAPSTAESNNEHLSSSQKSKHSIVF 246
Query: 505 GFIERTRSPSVN 540
+ + P+V+
Sbjct: 247 MAEQTSHHPAVS 258
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +1
Query: 289 KTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTH---KYITTSEDINNRTTSEDIN 459
+ TAI + N+ F+T SE K S E + +K ++ ++ +Y ++I +
Sbjct: 818 RQTAITELNEEFATSSEVDNKIS-IEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDF 876
Query: 460 DRTISQKRPEFNII 501
D+++ + + E N I
Sbjct: 877 DQSVEELQDEMNSI 890
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 370 SSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPEFNIIFGFIERTRSPSVNDRN 549
S+ K V G ++++ S + + + ND +Q PE + + + +PS++
Sbjct: 778 SNGKIVEKGNYEHLFVSTNSELKQQLSEFNDEKDTQPLPEHTTSYPSTQISLAPSIHVEG 837
Query: 550 V-VRSSTDRK 576
+ SS++RK
Sbjct: 838 LETYSSSERK 847
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -1
Query: 587 LFIIFLSVDDRTTLRSFTLGDRVLSMNPKMMLNSGRFCEIVRSFISS 447
+FI + DD TLG R+ + + + S FC I + S
Sbjct: 641 VFICTYATDDEFAPLCSTLGQRLEDLEDEKSIRSAEFCYIASKSLQS 687
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = +2
Query: 8 IRSRSPTRYTP--GETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGTFRPKDNITRNGE 181
+R+ S TP E PS N P + D + KW SE + + NG
Sbjct: 144 LRAVSTVSLTPYKSELPSGASTTQNRSPNDEEDEDEDYKWWTSENIDDTQKWTTLEHNGV 203
Query: 182 IIREDSYKSSEGVKKI 229
I + VK I
Sbjct: 204 IFAPPYEPLPKNVKLI 219
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 525 SSSLNESEDDVEFGSFL 475
S SLN+ EDD+EF +++
Sbjct: 6 SMSLNDEEDDIEFINYI 22
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +2
Query: 464 AQFHKNDPNSTSSS----DSLRELDHQ 532
A+ HKNDP SS D+ +E+D Q
Sbjct: 242 AELHKNDPPKFSSKRRRFDAFKEMDRQ 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,273
Number of Sequences: 5004
Number of extensions: 44426
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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