Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30574
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 32 0.34
07_01_0957 + 8037825-8038199,8038775-8038948 31 1.0
04_03_0385 + 15239611-15239988 31 1.0
04_03_0338 + 14623636-14624013 31 1.0
03_05_0022 + 19910403-19910735,19911310-19911486 30 1.4
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612... 30 1.8
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 2.4
05_01_0078 - 523366-525196,525622-525675,527135-529341 28 7.2
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 28 7.2
>02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 32.3 bits (70), Expect = 0.34
Identities = 22/96 (22%), Positives = 42/96 (43%)
Frame = +1
Query: 301 IHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQK 480
+H + + QS HT QS + S+I+ + + + + E+ +E + + +
Sbjct: 884 LHSLKEVIARQSVDHTGQSELQDSNIEKILALLFNHCESEEEGVRNVVAECLGKIALIEP 943
Query: 481 RPEFNIIFGFIERTRSPSVNDRNVVRSSTDRKIINK 588
R +I ERT SP+ N R V + I+ +
Sbjct: 944 R---KLIPALKERTSSPAANTRATVAIAIKYSIVER 976
>07_01_0957 + 8037825-8038199,8038775-8038948
Length = 182
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 17 RSPTRYTPGETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGTFRPKDNITRNGEIIRED 196
R+P+ TP + +P D +G+ D + V S + G R DN+ R G+I R
Sbjct: 53 RAPSSGTPAGVLLE-QPADEFEEDGNVDESERTS-VMSRRGGCDREGDNVQRLGDITRRR 110
Query: 197 SYKSSEG 217
+ + G
Sbjct: 111 GIEVAAG 117
>04_03_0385 + 15239611-15239988
Length = 125
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 17 RSPTRYTPGETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGTFRPKDNITRNGEIIRED 196
R+P+ TP + +P D +G+ D + V S + G R DN+ R G+I R
Sbjct: 39 RAPSSGTPAGVLLE-QPADEFEEDGNVDESERTS-VMSRRGGCDREGDNVQRLGDITRRR 96
Query: 197 SYKSSEG 217
+ + G
Sbjct: 97 GIEVAAG 103
>04_03_0338 + 14623636-14624013
Length = 125
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 17 RSPTRYTPGETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGTFRPKDNITRNGEIIRED 196
R+P+ TP + +P D +G+ D + V S + G R DN+ R G+I R
Sbjct: 39 RAPSSGTPAGVLLE-QPADEFEEDGNVDESERTS-VMSRRGGCDREGDNVQRLGDITRRR 96
Query: 197 SYKSSEG 217
+ + G
Sbjct: 97 GIEVAAG 103
>03_05_0022 + 19910403-19910735,19911310-19911486
Length = 169
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 17 RSPTRYTPGETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGTFRPKDNITRNGEIIR 190
R+P+ TP + +P D +G+ D + V S + G R DN+ R G+I R
Sbjct: 39 RAPSSGTPAGVVLE-QPADEFEEDGNVDESERTS-VMSRRGGCDREGDNVQRLGDITR 94
>01_05_0736 -
24760576-24760690,24760885-24761108,24761188-24761248,
24761909-24763992
Length = 827
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/76 (22%), Positives = 40/76 (52%)
Frame = +1
Query: 280 NNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDIN 459
+ +K +D+ + +TH ++S +HSS + V S TH++ +T ++I++ + +
Sbjct: 445 SEQKRKECDEDSLVDESMCKTHEQKSKDDHSSPEDV-SKTHEFDSTKDNISSAVDGNEKH 503
Query: 460 DRTISQKRPEFNIIFG 507
+ K+ + N + G
Sbjct: 504 E--FESKKDDTNSLEG 517
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 304 HQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSE-DINNRTTSEDINDRTISQK 480
H++ K + S ++H + + S H + S+ D +TT NDR +K
Sbjct: 300 HKNAKCKKSSRHDSESDSESDHKNARREKSSRHDSESDSDGDYGKKTTKHGKNDRDERKK 359
Query: 481 RP 486
RP
Sbjct: 360 RP 361
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/50 (24%), Positives = 20/50 (40%)
Frame = +1
Query: 286 RKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINN 435
++TT + + H H EH + + H I+TSE I +
Sbjct: 881 KQTTETTEQKGKHENKIRNHPHDPHVEHIELMEARNSKHMAISTSETIRD 930
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +2
Query: 8 IRSRSPTRYTPGETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGTFRPKDNITRNGEII 187
+ S+SP ++ + RP D + + D P K + E+ G PKD+I G+I+
Sbjct: 578 VMSKSPNKHN--RLYMEARPLD--KEDLQQDEPSLCKAIDDERIG---PKDDIKERGKIL 630
Query: 188 REDSYKSSEGVKKI 229
E+ + KKI
Sbjct: 631 SEEFGWDKDLAKKI 644
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,781,847
Number of Sequences: 37544
Number of extensions: 244174
Number of successful extensions: 663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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