Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30573
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 32 0.076
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 29 0.53
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.70
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.6
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.8
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 3.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.8
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 3.8
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 3.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.8
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 26 6.6
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 25 8.7
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 8.7
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 25 8.7
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 8.7
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 25 8.7
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 32.3 bits (70), Expect = 0.076
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +3
Query: 300 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGE 479
P +H HH P V H+ DH P K+E S + H+ + + D ++
Sbjct: 390 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAKGALEDYIQTF 449
Query: 480 YSLLQPDG 503
Q DG
Sbjct: 450 VETFQIDG 457
Score = 31.9 bits (69), Expect = 0.100
Identities = 16/65 (24%), Positives = 25/65 (38%)
Frame = +3
Query: 201 RSPFDSTCRSYCSRRPRGHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHA 380
++ D C+ +CS + + P +H HH P V H+ DH
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHK 221
Query: 381 PAKYE 395
P K+E
Sbjct: 222 PWKHE 226
Score = 28.7 bits (61), Expect = 0.93
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Frame = +3
Query: 300 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 446
P +H HH P V H+ DH P K+E +S PH G DHK +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366
Query: 447 E 449
E
Sbjct: 367 E 367
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 300 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 395
P +H HH P + H+ DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 29.5 bits (63), Expect = 0.53
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +1
Query: 298 ALCNMLQSCTTLR-FQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*K 474
+LC+++ S +++ F + M+ LP + S P SPN +P++ +
Sbjct: 33 SLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQFGS----PVAASPNQQPLVESQNR 88
Query: 475 ANTLYSSLMVPSQG-----RIHS*PPQRIQR 552
N Y+SL++ G R + PPQ I R
Sbjct: 89 RNVTYASLVIGKLGIAQLIRQQTDPPQIIHR 119
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 136 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPV 252
P Q T+ +P SHAAP+ + P H+ P + A PV
Sbjct: 63 PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +1
Query: 376 MLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPSQGRIHS*----PPQR 543
++P +SH + P TS NT + + NT ++ P ++S PP
Sbjct: 69 IVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNT--TTTTAPPTTHVNSTTTVVPPTT 126
Query: 544 IQRYCTQLPSLNAQRCTSIRRAPAVHAGPRSFISASSKSILGPL 675
T +P T++ P HA SF+ +++S + P+
Sbjct: 127 HVNTTTVVPPTTHVNTTTVV-PPTTHANTTSFVPTTTESSIHPI 169
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.9 bits (59), Expect = 1.6
Identities = 27/110 (24%), Positives = 44/110 (40%)
Frame = +1
Query: 346 PSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPSQGRIH 525
PS P +P S P+RIPTP P++ V + S K ++ +P+
Sbjct: 585 PSVIPPRVPTPVPGRTLSPKPTRIPTPI---PSSLNVSLESSKKPEIFHERHIPTPETGP 641
Query: 526 S*PPQRIQRYCTQLPSLNAQRCTSIRRAPAVHAGPRSFISASSKSILGPL 675
+ P + TQ+P Q+ ++ + P S S +K G L
Sbjct: 642 NKPSKNNILKSTQVPVTPKQKSSTANKGSTSSPSPPSSESKKTKRSWGRL 691
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 249 RGHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 419
+ S Y+H VV+ Q P+ H P + SDH + A K F SV++P
Sbjct: 411 KNRSRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 323 HDWSMLHRAEVLDYWRSMYI 264
+D+S + E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +2
Query: 593 PPFAGLLLST----PVPAASFRLPVSPFLAPCDSFCFQ 694
PP LL+ T PVP S ++ + L P S CFQ
Sbjct: 572 PPLVPLLIGTTRFFPVPLVSSQIAIISSLGPSYSGCFQ 609
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 135 AFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCS 239
+ SSS + PS+ S SST S + ST SY S
Sbjct: 177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLS 211
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 286 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 414
S S C + S + NT +S + LPR++S+ IP++
Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.8
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +1
Query: 343 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAI-----TSPNTKPVMVMS*KANTLYSSLMVP 507
LPS+TP + + S ++ S P ++ TS ++ P+ +S +T +S
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSST 341
Query: 508 SQGRIHS*PPQRIQRYCTQLPSLNAQRCTSIRRAPAVHAGPRSFISASS 654
++S T L S+N+ TS P S SASS
Sbjct: 342 PLSSVNS--TTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASS 388
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 154 AHYTPVLSHAAPVLTHAAPL 213
A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 343 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSPN 444
+PSNT I S L P S++IP+ +PT + S N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 141 SSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRGHSSYIHASPV 284
SS+ L S + SST S S +S S S+R +S + ++PV
Sbjct: 987 SSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPV 1034
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 343 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 456
+P T + + LP S+ + S+ TP+ ++ T PV
Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 693 WKQNESQGAKNGLTGSRNEAAGTGVDSRSPANGGAALC 580
W QN+ Q + SRN GTG +S LC
Sbjct: 82 WFQNKRQSLRRSNCLSRNRLEGTGENSLLRRKSTLTLC 119
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 360 DHVEDHAPAKYEFSYSVEDPHTGDHKSQHETR 455
D+V++H P E + ++ DH + ++TR
Sbjct: 2 DNVQEHDPDTQEHNNETQNHKQEDHSNSYQTR 33
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 186 SSTDSRSPFDSTCRSYCSR 242
S +DS S DS+C S CSR
Sbjct: 80 SDSDSDSDSDSSCSSCCSR 98
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 124 ERCFGKTQHGRGPRL*H 74
+RCFGKT G P L H
Sbjct: 415 KRCFGKTNDGSNPCLYH 431
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 648 SRNEAAGTGVDSRSPANGGAALCVQARKLCTIALNPL--WWSAVYSTLRWNHQAGVESIR 475
S N A+ +S + +N G++ + T+ + L W + + WN ++
Sbjct: 64 SPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVK 123
Query: 474 LSRHHHHGFRVGTC 433
L R+ + G G C
Sbjct: 124 LIRNRYTGMNAGYC 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,489,805
Number of Sequences: 5004
Number of extensions: 79688
Number of successful extensions: 305
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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