Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30573
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 30 2.2
02_01_0302 - 2021221-2023305 30 2.2
10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753 29 3.0
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 3.0
03_05_0540 + 25375261-25376931 29 3.0
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 29 3.0
01_01_0247 + 2023019-2023802,2023894-2023997 29 3.0
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 29 3.9
09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730 29 3.9
04_04_0512 + 25806599-25808080 29 3.9
04_01_0471 + 6099768-6100094,6100384-6100416 29 3.9
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.9
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191 29 3.9
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23... 29 5.2
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 29 5.2
12_02_1265 - 27435096-27437675 28 6.9
11_04_0141 + 13947716-13947770,13947885-13949095 28 6.9
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 6.9
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 28 6.9
11_01_0535 + 4234282-4235082 28 9.1
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668... 28 9.1
08_01_0397 - 3509186-3510291,3510322-3512335 28 9.1
05_01_0518 + 4421314-4421346,4421427-4421767,4421960-4422619,442... 28 9.1
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 28 9.1
02_03_0167 - 15923872-15925683 28 9.1
02_03_0131 - 15576422-15577021 28 9.1
01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070 28 9.1
01_05_0732 + 24705826-24705990,24706074-24706505 28 9.1
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 113 WEDTAWPWPSSITPPWQIAK 54
W+D WPSS + PW++ K
Sbjct: 227 WQDVLLLWPSSSSSPWELTK 246
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 162 YPSIESCCSSTDSRSPFDSTCRSYCSRRPRGHSSYIHASPVVQHFSPVQHAP 317
+PS + + P ST SY S P+GH++ H SP +P H+P
Sbjct: 483 HPSPPGSTTPSYPSPPSSSTTPSYHSP-PQGHTTPSHPSPPSSSTAPPSHSP 533
>10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753
Length = 434
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 165 PSIESCCSSTDSRSPFDSTCRSYCSRRPRGHSSYIHAS 278
P++ SCCSS+ +S+ S R+ R HS Y S
Sbjct: 107 PAVASCCSSSSDSETSESS-NSTGGRKSRSHSDYSEIS 143
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 355 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 453
TP M+ + P +M S + + TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346
>03_05_0540 + 25375261-25376931
Length = 556
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -2
Query: 636 AAGTGVDSRSPANGGAALCVQARKLCTIALNPLWWSAVYSTLRWNHQAGVESIRLSRHHH 457
AAG D+R A+GG AL AR+ + + + T AG + ++
Sbjct: 307 AAGARADARCGADGGTALHAAARRGDEVIARLILANGAAGTAAVRDAAGKTAFEIAAEEC 366
Query: 456 HGFRV 442
HG R+
Sbjct: 367 HGGRI 371
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 306 AQG*SVGLLAKHVYTKNVHGGGVNNRTGMLNQRGCVSQYWSSMTQYWGIMC 154
AQG SV L+ ++V GG+N G+L RG ++ + + + + WG C
Sbjct: 433 AQGKSVILVRTETSPEDV--GGMNAAAGILTARGGMTSHAAVVARGWGKCC 481
>01_01_0247 + 2023019-2023802,2023894-2023997
Length = 295
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 611 LLSTPVPAASFRLPVSPFLAPCDSFCFQVGFQFWPLVGSFQPPCG 745
+ S+ V A + SPF P +G+ FW L G P CG
Sbjct: 23 IASSTVDAINTTNTTSPFCEPARCGNLTIGYPFW-LAGKHPPECG 66
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 110 EDTAWPWPSSITPPWQIAKIEQTTAIL 30
E WP P S PP ++ K EQT ++
Sbjct: 136 EAARWPPPPSFQPPIEVIKAEQTAPLI 162
>09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730
Length = 246
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 726 EPTRGQN*KPTWKQNESQGAKNGLTGSRNEAAGTGVDSRSPANGG 592
EPT KP E + K L+ + E A TG++S+ P +GG
Sbjct: 121 EPTADDQTKPV---GEEENRKEPLSEKQLERAETGLESQEPLSGG 162
>04_04_0512 + 25806599-25808080
Length = 493
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +3
Query: 336 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 476
+P V +S+ + +HA ++ P GD +++H++ + + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438
>04_01_0471 + 6099768-6100094,6100384-6100416
Length = 119
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 45 LLDFGYLPRWCYRRGPRPC-CVFPKHR 122
+L+F +LPR RRG R C V P H+
Sbjct: 67 VLNFAFLPRTSLRRGARACRIVVPHHK 93
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -2
Query: 417 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 325
+PR R TSR+H RHDRSV R Q S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327
>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
Length = 539
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 617 STPVPAASFRLPVSPFLAPCDSFCFQVGFQFWPLVGSFQPPCG 745
S+ V A + SPF P +G+ FW L G P CG
Sbjct: 270 SSTVDAINTTNTTSPFCEPARCGNLTIGYPFW-LAGKHPPECG 311
>09_01_0008 -
233137-233279,233712-233827,235376-235720,236218-236292,
236508-236636,237516-237589,237836-237968,239366-239584,
239671-239756,239843-241107,241304-241640,242548-242862,
243614-243697,243776-243883,243981-244079
Length = 1175
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 328 WCTTGACCTGLKCWTTGEACIYEECPRGRREQ*DRHVE 215
WC + G +C +AC E P G RE D H E
Sbjct: 379 WCDNKSKSMGARCHDD-DACSKESLPYGNREDHDGHSE 415
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 10 RHLNMFFKIAVVCSILAICQGGVI 81
RH+ + + A VC +A+C+GG +
Sbjct: 22 RHVQILKRSAAVCGAVAVCRGGAV 45
>12_02_1265 - 27435096-27437675
Length = 859
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 252 HGGGVNNRTGMLNQRGCVSQYWSSMTQY-WGIMCRCLMRRLVMANDALGRHSMAVALVYN 76
HGGG + L V QY+ ++ Q WG M ++ L DA + + + L+++
Sbjct: 287 HGGGPQSNLRSLKSLRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAF-QANQVLKLLHD 345
Query: 75 TTLA 64
T+A
Sbjct: 346 HTIA 349
>11_04_0141 + 13947716-13947770,13947885-13949095
Length = 421
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 621 VDSRSPANGGAALCVQARKLCTIAL 547
V +R+ A GGAA +A ++CT+AL
Sbjct: 326 VVARARAQGGAAAADKAERMCTVAL 350
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 127 HDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVDILRIY 270
H +HQ + S A ++AA H I HA+P D+L+ Y
Sbjct: 46 HQHHNHQQLGYNLEPSSLALLPPSNAAAAAAHHATIAHASPHDLLQFY 93
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 111 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRG 254
P+ +P R FSS N L P S SR T + +PRG
Sbjct: 322 PEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRG 369
>11_01_0535 + 4234282-4235082
Length = 266
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 227 VLLFTPPPWTFFVYTCFASSP 289
++ +TP W FF+YTC P
Sbjct: 217 LVAWTPAAWAFFLYTCVNLGP 237
>09_04_0687 +
19465594-19465780,19465994-19466022,19466731-19466803,
19467237-19467311,19467583-19467644,19467727-19467795,
19468447-19468475,19468553-19468760,19468867-19469100,
19469591-19470598
Length = 657
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +1
Query: 382 PRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPSQGRIHS*PPQRIQRYCT 561
PR SSH PS SPNT P ++ S K L+ P+ H+ P +
Sbjct: 501 PRHSSSHQPS---IHVRVSPNTSPPLLSSPKIKELHELPRPPANASKHTTFPSLVAHSAP 557
Query: 562 QLPS 573
+P+
Sbjct: 558 LVPN 561
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 471 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVR-RQLESQRGARLE 313
SRHHH R DR RR+ RE +R R ++ E +R R E
Sbjct: 39 SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92
>05_01_0518 +
4421314-4421346,4421427-4421767,4421960-4422619,
4422992-4423116,4423337-4423692,4423768-4423852,
4423917-4423954
Length = 545
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/95 (26%), Positives = 36/95 (37%)
Frame = -2
Query: 741 QGG*NEPTRGQN*KPTWKQNESQGAKNGLTGSRNEAAGTGVDSRSPANGGAALCVQARKL 562
QGG + RG++ P W S + L G + SPA+GG AL +
Sbjct: 271 QGGTRQLVRGRS-LPMWGGGASSSREEELAGMERRS--------SPASGGGALLASEEEP 321
Query: 561 CTIALNPLWWSAVYSTLRWNHQAGVESIRLSRHHH 457
+ + W ST R AG++ L H
Sbjct: 322 AGVGRSCQRWGGAPST-REGELAGIDLFDLVEQLH 355
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 207 PFDSTCRSYCSRRPRGHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDH 377
P S +YCS S Y H V + V P H + P++ E+ H+ED+
Sbjct: 10 PAGSGKSTYCS------SLYQHCETVGRTIHMVNLDPAAEHFSYPVSTENHRHLEDN 60
>02_03_0167 - 15923872-15925683
Length = 603
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -3
Query: 428 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSML 306
AG+ +L+ + +++RGS + +FDG N+SVV W+ L
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTAL 226
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 447 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 319
R G DR PR R H R+ D DR R E +RG R
Sbjct: 20 RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60
>01_06_1068 - 34270420-34270581,34272185-34272238,34273741-34274070
Length = 181
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 165 PSIESCCSSTDSRSPFDSTCRSYCSRRPRGHSSYIHASPVVQ 290
P+ +C + + SRS CR C RRPRG +++ V++
Sbjct: 44 PAPPACYTRSTSRSI--GRCRGCCRRRPRGWAAHAWQPSVME 83
>01_05_0732 + 24705826-24705990,24706074-24706505
Length = 198
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 233 LFTPPPWTFFVYTCFASSPTLQPCATCSSRAPRCDSN 343
+FT P F + TC A + + A +SR RC+ N
Sbjct: 94 VFTGPILGFLLTTCAADADDHEAAARVASRYTRCEEN 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,039,857
Number of Sequences: 37544
Number of extensions: 627307
Number of successful extensions: 2278
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2274
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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