Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30573
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.57 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.75 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +1

Query: 88  GHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 249
           GHGH  S      H   SH AT H+     H+ P+   + P     G   H  P
Sbjct: 420 GHGH--SHIHATPHHHHSHAATPHH----QHSTPLAHSSYPAAIQIGHTPHHHP 467


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 635 LRGPAWTAGARRMEVQRCAFRLGSCVQ 555
           L    W AGA+R   QRC   +   VQ
Sbjct: 88  LHTTVWVAGAQRGNEQRCTVTMHGTVQ 114


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 131 SWRTMLWEDTAWPWPSS 81
           SW T++W D+   W  S
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 360 DHVEDHAPAKYEFSYSVEDP 419
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 360 DHVEDHAPAKYEFSYSVEDP 419
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 663 NGLTGSRNEAAGTG 622
           N ++G RN+A GTG
Sbjct: 118 NHMSGDRNDAHGTG 131


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 189 STDSRSPFDSTCRSYCSRRPRGHSSYIHASP 281
           S+ SR+   S    YC RRP    S   A P
Sbjct: 32  SSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 54 NRADYSNFEEHVEM 13
          N A++SNFE+ V M
Sbjct: 26 NAANFSNFEDRVTM 39


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 189 STDSRSPFDSTCRSYCSRRPRGHSSYIHASP 281
           S+ SR+   S    YC RRP    S   A P
Sbjct: 32  SSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,712
Number of Sequences: 438
Number of extensions: 5713
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)