Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30573
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 36 0.038
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 32 0.35
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ... 32 0.46
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 1.1
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 29 3.3
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 29 4.3
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ... 28 5.7
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 28 5.7
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 28 5.7
At5g31873.1 68418.m03777 hypothetical protein 28 7.6
At5g28120.1 68418.m03396 hypothetical protein 28 7.6
At5g28110.1 68418.m03395 hypothetical protein 28 7.6
At3g30816.1 68416.m03949 hypothetical protein 28 7.6
At2g34910.1 68415.m04286 expressed protein 28 7.6
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 10.0
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 10.0
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 10.0
At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putati... 27 10.0
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain... 27 10.0
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 27 10.0
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 121 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAA 246
VRH P +H +P +SH++P + ++P + H+ P+V A+
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAAS 203
Score = 28.3 bits (60), Expect = 5.7
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Frame = +1
Query: 301 LCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR--IPTPAITSPNTKPVMVMS*K 474
LC+ L+S + F L + +P+ + I + TPA ++P + PV +
Sbjct: 87 LCSALESSREMGFVLDDT----KALAMPKICNVPIDPNCDVSTPAASTPVSPPVESPTTS 142
Query: 475 ANTLYSSLMVPSQGRI-HS*PPQRIQR--YCTQLPSLNAQRCTSIRRAPAV-HAGPRSFI 642
++ S + PS + HS PP R P ++ + R +PAV H+ P
Sbjct: 143 PSSAKSPAITPSSPAVSHSPPPVRHSSPPVSHSSPPVSHSSPPTSRSSPAVSHSSPVVAA 202
Query: 643 SASSKSI 663
S+ K++
Sbjct: 203 SSPVKAV 209
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 32.3 bits (70), Expect = 0.35
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Frame = +1
Query: 355 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPSQGRIHS*P 534
+PI S P + S+ S +PA+TSP T P + A++ S P+ S P
Sbjct: 23 SPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVSESSPP 82
Query: 535 PQRIQRYCTQLPSLNAQRCTSIRRAPA-VHAGPRSFISASSKSILGP 672
P + +P+ S PA V P + ++A + P
Sbjct: 83 PTPVPESSPPVPAPMVSSPVSSPPVPAPVADSPPAPVAAPVADVPAP 129
>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 889
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 567 KLCTIALNPLWWSAVYSTLRWNHQAGVESIRLSRHHHH 454
KLC + P+++ VYS ++ + E +LSR HH
Sbjct: 669 KLCQACITPIYFGNVYSCMQCDFSLHEECAKLSRKTHH 706
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 340 QLPSNTPIMSKIMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 456
Q P+ + S++ P S S+ PS+ PTP + +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 696 TWKQNESQG-AKNGLTGSRNEAAGTGVDSRSPANGGAA 586
T ++ S G A G TGS + +AG + ANGGAA
Sbjct: 437 TGGESTSSGVASGGSTGSESASAGAASGGSTEANGGAA 474
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +3
Query: 132 RAFSSSNGTLYPSIESC--CSSTDSRSPFDSTCRSYCSRRPRGHSSYIHASPVVQHFSPV 305
R + N +P C CS S F ST +Y + Y V HF P
Sbjct: 183 RFLNCLNSLWHPECFRCYGCSQPISEYEF-STSGNYPFHKACYRERYHPKCDVCSHFIPT 241
Query: 306 QHAPVVHHAAIPIAVEH--SDHVEDHAP 383
HA ++ + A P V+ H D P
Sbjct: 242 NHAGLIEYRAHPFWVQKYCPSHEHDATP 269
>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 977
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 567 KLCTIALNPLWWSAVYSTLRWNHQAGVESIRLSRHHHH 454
KLC + P+++ YS ++ + E +LSR HH
Sbjct: 703 KLCQACITPIYFGNFYSCMQCDFILHEECAKLSRKIHH 740
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -2
Query: 567 KLCTIALNPLWWSAVYSTLRWNHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHT 388
KLC + P+++ YS L+ + E LSR HH +P R++ +
Sbjct: 622 KLCQACIMPIYFGNSYSCLQCDFILHEECANLSRRLHHPIHPHLLTLISDNPLRDVGSWN 681
Query: 387 SREHD 373
+ + D
Sbjct: 682 NSDRD 686
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC
transporter, PF00664: ABC transporter transmembrane
region
Length = 1488
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 131 SWRTMLWEDTAWPWPSSITPPWQIAKIEQTTAILKNMLRCLTE 3
SW T L + + P + WQ+ + +QT ++K RC TE
Sbjct: 241 SWMTPLMQ-LGYRKPITERDVWQLDQWDQTETLIKRFQRCWTE 282
>At5g31873.1 68418.m03777 hypothetical protein
Length = 271
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 429 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 298
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 429 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 298
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 429 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 298
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 429 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 298
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273
>At2g34910.1 68415.m04286 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 7.6
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
Frame = +1
Query: 289 NTSALCNMLQSCTTLRFQLPSNTPIMS----KIMLPRSMSSHIPSRIPTPAITSPNTKPV 456
N + N L TL+ Q+ + P ++ +++LP +MS + +P P + P KP
Sbjct: 32 NPNPNINFLVQKATLQNQMTVSRPSLNEESFRMVLPLAMSPPRDNAVPLPVLPEPMMKPR 91
Query: 457 MVMS*KANTL-YSSLMVPSQGRIHS*PPQRIQRYCTQLPSLNAQRCTSIRRAPAVHAGPR 633
+S + + L P + + +C LP + S + ++ +
Sbjct: 92 KKLSHQESMLSLRKSRYPEKNFYQEEENFKCNAFCLSLPGFGKRPVRSPKSEDSI---KK 148
Query: 634 SFISASSKS 660
I ASS S
Sbjct: 149 KMIKASSFS 157
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 477 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 331
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 477 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 331
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 477 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 331
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putative
similar to GI:6688808 [Medicago sativa subsp. x varia],
caffeic acid O-methyltransferase (homt1), Populus
kitakamiensis, EMBL:PKHOMT1A
Length = 359
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 172 LSHAAPVLTHAAPLIQHAGPIVHAAPVD 255
LS+AA VL H + A P+VH A V+
Sbjct: 115 LSYAAYVLQHHQEALMRAWPLVHTAVVE 142
>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 174
Score = 27.5 bits (58), Expect = 10.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 141 SSSNGTLYPSIESCCSSTD-SRSP----FDSTCRSYCSRRPRGHSSYIHASP 281
+++N + PS S SS SRSP TC S R R + Y+H SP
Sbjct: 113 TTANSSPPPSTTSSSSSKSRSRSPPSPSTPETCPSCVERSIRNNGCYVHRSP 164
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1495
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 68 WQIAKIEQTTAILKNMLRCLTE 3
WQ+ K +QT ++K RC TE
Sbjct: 261 WQLDKWDQTETLIKRFQRCWTE 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958,596
Number of Sequences: 28952
Number of extensions: 452134
Number of successful extensions: 1573
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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