Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30572
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   115   8e-27
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   115   8e-27
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    25   8.3  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  115 bits (276), Expect = 8e-27
 Identities = 50/70 (71%), Positives = 61/70 (87%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 224 VFRIRVRRGG 253
           ++RIRVRRGG
Sbjct: 61  IYRIRVRRGG 70



 Score =  109 bits (262), Expect = 4e-25
 Identities = 51/82 (62%), Positives = 58/82 (70%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FE
Sbjct: 72  KRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFE 131

Query: 436 VILVDPSHKAIRRDPKINWIVN 501
           VILVDPSHKAIRRDP+INWIVN
Sbjct: 132 VILVDPSHKAIRRDPRINWIVN 153



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLQ 623
           KHRE RGLTS G+ SRG+GKGHR++ +    + A WL+
Sbjct: 157 KHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLR 191


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  115 bits (276), Expect = 8e-27
 Identities = 50/70 (71%), Positives = 61/70 (87%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 224 VFRIRVRRGG 253
           ++RIRVRRGG
Sbjct: 61  IYRIRVRRGG 70



 Score =  109 bits (262), Expect = 4e-25
 Identities = 51/82 (62%), Positives = 58/82 (70%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FE
Sbjct: 72  KRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFE 131

Query: 436 VILVDPSHKAIRRDPKINWIVN 501
           VILVDPSHKAIRRDP+INWIVN
Sbjct: 132 VILVDPSHKAIRRDPRINWIVN 153



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLQ 623
           KHRE RGLTS G+ SRG+GKGHRY+ +    + A WL+
Sbjct: 157 KHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLR 191


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 483 DQLDRECCTKHREMRGLTSAGRS--SRGLGKGHRYSQTKGGSRRAA 614
           D LDRE  T+   +  +  AG+S  S   GKG + S T+   RR A
Sbjct: 212 DALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,256
Number of Sequences: 5004
Number of extensions: 62513
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)