Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30572
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 114 8e-26
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 112 3e-25
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 37 5e-06
01_01_0652 + 4975091-4975585 30 2.2
05_02_0037 + 5883285-5884292 29 3.8
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 29 3.8
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192... 29 5.0
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 8.7
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 28 8.7
06_01_1010 + 7866158-7866661 28 8.7
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 114 bits (274), Expect = 8e-26
Identities = 50/70 (71%), Positives = 60/70 (85%)
Frame = +2
Query: 44 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 224 VFRIRVRRGG 253
V+R+RVRRGG
Sbjct: 61 VYRVRVRRGG 70
Score = 101 bits (243), Expect = 4e-22
Identities = 45/80 (56%), Positives = 55/80 (68%)
Frame = +1
Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
KRPV KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE
Sbjct: 72 KRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFE 131
Query: 436 VILVDPSHKAIRRDPKINWI 495
+ILVD +H AIR DP+INW+
Sbjct: 132 IILVDVAHSAIRNDPRINWL 151
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 KHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLQTQ 629
KHRE+RGLTSAG+ RGL GKGH + + + SRRA W + Q
Sbjct: 157 KHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQ 196
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 112 bits (269), Expect = 3e-25
Identities = 49/69 (71%), Positives = 59/69 (85%)
Frame = +2
Query: 47 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVV 226
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGYVV
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 227 FRIRVRRGG 253
+R+RVRRGG
Sbjct: 167 YRVRVRRGG 175
Score = 101 bits (243), Expect = 4e-22
Identities = 45/80 (56%), Positives = 55/80 (68%)
Frame = +1
Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
KRPV KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE
Sbjct: 177 KRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFE 236
Query: 436 VILVDPSHKAIRRDPKINWI 495
+ILVD +H AIR DP+INW+
Sbjct: 237 IILVDVAHSAIRNDPRINWL 256
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 KHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLQTQ 629
KHRE+RGLTSAG+ RGL GKGH + + + SRRA W + Q
Sbjct: 262 KHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQ 301
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 36.7 bits (81), Expect(2) = 5e-06
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRN 333
KRPV KG Y KPK G+ QLK RN
Sbjct: 267 KRPVHKGIVYSKPKHQGITQLKFQRN 292
Score = 31.5 bits (68), Expect(2) = 5e-06
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 430 FEVILVDPSHKAIRRDPK 483
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 507 TKHR-EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAW 617
T+ R E R +AG+ GKG R + +GG RR W
Sbjct: 26 TRRRPEGRHGEAAGKRREAAGKGGRQREARGGGRRMRW 63
>05_02_0037 + 5883285-5884292
Length = 335
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 127 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPK 258
AV ++ AP ++ +A +SP C R CC +P + WWP+
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPR 316
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 354 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLGPP 247
+++ G +V G++ V +ALGL ++GT W L P
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKP 622
>10_08_0147 +
15218150-15218401,15218569-15218643,15219099-15219208,
15219299-15219560
Length = 232
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 168 PQGRTKPED*ATVLNKVMLYSESVCDVVAQ 257
P G +P A +V+LY E +C+ VAQ
Sbjct: 199 PPGLPRPVSKAASSTRVLLYEEELCEAVAQ 228
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 528 GLTSAGRSSRGLGKGHRYSQTKGGSRRAA 614
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 LYSESVCDVVAQASSC*GCHLWQAQEPWCQ-PVEAHAQPSIHC 347
+Y+ + DVV + C G A EPW + P + H + C
Sbjct: 517 IYASAAADVVKVMNKCKGTKSKAAAEPWAEGPSKEHFKAKREC 559
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 516 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRR 608
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,425,374
Number of Sequences: 37544
Number of extensions: 462303
Number of successful extensions: 1184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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