Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30572
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   5e-30
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 30   1.7  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   2.9  
SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  128 bits (309), Expect = 5e-30
 Identities = 54/70 (77%), Positives = 66/70 (94%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+V
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 224 VFRIRVRRGG 253
           ++R+RVRRGG
Sbjct: 61  IYRVRVRRGG 70



 Score =  110 bits (264), Expect = 1e-24
 Identities = 51/80 (63%), Positives = 59/80 (73%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KGATYGKP + GVN+LK  R+L+S+AEE            +SYWV QDS YKYFE
Sbjct: 72  KRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFE 131

Query: 436 VILVDPSHKAIRRDPKINWI 495
           VI+VDP HKAIRRD +INWI
Sbjct: 132 VIMVDPFHKAIRRDARINWI 151



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAW 617
           KHRE+RGLT+AG  +RG+ KGH Y++  G SRRA W
Sbjct: 157 KHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANW 192


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 133 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPKRPVAKGATYGKPKSH 303
           P  D+      AH+    P T ++PC    C  QNPC+   P     + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query: 91  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 255
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+   P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758

Query: 256 KRPVAKGATYGKPKSHGVNQ 315
                + +T G P++ G  Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = +2

Query: 101 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVVFRIRVRRGGPSVQLLRVP 280
           +F ++     YR+ T+MH     +RP  + R G+R KQ ++   + +       +L+ V 
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQMWLTQLLELTSLNGYFELVLVF 75

Query: 281 LMAS 292
           +++S
Sbjct: 76  ILSS 79


>SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 204 VLNKVMLYSESVCDVVAQASSC*GCHLWQAQEPWCQPVEAHAQPS 338
           V+N  +L    V + V Q   C  CH   AQ+ W   V+   + S
Sbjct: 121 VMNSTILQQVFVVEYVVQGQMCDACHRQAAQDFWKAVVQVRQKTS 165


>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 660

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 26  LPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYR 205
           LP  A +G Y + ++ +R +  + +R  + +RV+ Y   T        T  D A   G  
Sbjct: 474 LPDNANLGCYPWSKQTFRHEGPNHIRTSVHIRVYAYIMSTTQQSKITKTITDAAVITGLV 533

Query: 206 AKQGYV 223
           A  G+V
Sbjct: 534 AGIGWV 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,575,889
Number of Sequences: 59808
Number of extensions: 536869
Number of successful extensions: 1236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)