Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30572
         (725 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   139   3e-33
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   139   3e-33
AY075262-1|AAL68129.1|  656|Drosophila melanogaster AT22312p pro...    31   1.6  
AE014298-2571|AAO41694.1|  592|Drosophila melanogaster CG5613-PB...    31   1.6  
AE014298-2570|AAF48729.1|  655|Drosophila melanogaster CG5613-PA...    31   1.6  
AE013599-3185|AAG22188.1| 1542|Drosophila melanogaster CG9485-PA...    29   6.4  
AE013599-3184|AAF46713.3| 1546|Drosophila melanogaster CG9485-PC...    29   6.4  
AE013599-3183|AAM70868.2| 1629|Drosophila melanogaster CG9485-PB...    29   6.4  

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  139 bits (337), Expect = 3e-33
 Identities = 60/70 (85%), Positives = 69/70 (98%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQG+V
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 224 VFRIRVRRGG 253
           ++RIRVRRGG
Sbjct: 61  IYRIRVRRGG 70



 Score =  125 bits (301), Expect = 7e-29
 Identities = 57/80 (71%), Positives = 61/80 (76%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG TYGKPKSHGVNQLKP R LQSIAEE            +SYW+AQD+SYKYFE
Sbjct: 72  KRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFE 131

Query: 436 VILVDPSHKAIRRDPKINWI 495
           VIL+D  H AIRRDPKINWI
Sbjct: 132 VILIDTHHSAIRRDPKINWI 151



 Score = 72.1 bits (169), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 35/36 (97%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAW 617
           KHRE+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW
Sbjct: 157 KHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAW 192


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  139 bits (337), Expect = 3e-33
 Identities = 60/70 (85%), Positives = 69/70 (98%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAYRY+QELYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQG+V
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60

Query: 224 VFRIRVRRGG 253
           ++RIRVRRGG
Sbjct: 61  IYRIRVRRGG 70



 Score =  125 bits (301), Expect = 7e-29
 Identities = 57/80 (71%), Positives = 61/80 (76%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG TYGKPKSHGVNQLKP R LQSIAEE            +SYW+AQD+SYKYFE
Sbjct: 72  KRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFE 131

Query: 436 VILVDPSHKAIRRDPKINWI 495
           VIL+D  H AIRRDPKINWI
Sbjct: 132 VILIDTHHSAIRRDPKINWI 151



 Score = 72.1 bits (169), Expect = 7e-13
 Identities = 31/36 (86%), Positives = 35/36 (97%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAW 617
           KHRE+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW
Sbjct: 157 KHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAW 192


>AY075262-1|AAL68129.1|  656|Drosophila melanogaster AT22312p
           protein.
          Length = 656

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 459 QGHSSRS*DQLDRECCTKHREMRGLTSAGRSSRG 560
           +GH  RS  Q+ RE   +HR   GL   GRS +G
Sbjct: 323 EGHLERSAQQVRREQSPRHRVFMGLDVFGRSRKG 356


>AE014298-2571|AAO41694.1|  592|Drosophila melanogaster CG5613-PB,
           isoform B protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 459 QGHSSRS*DQLDRECCTKHREMRGLTSAGRSSRG 560
           +GH  RS  Q+ RE   +HR   GL   GRS +G
Sbjct: 259 EGHLERSAQQVRREQSPRHRVFMGLDVFGRSRKG 292


>AE014298-2570|AAF48729.1|  655|Drosophila melanogaster CG5613-PA,
           isoform A protein.
          Length = 655

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 459 QGHSSRS*DQLDRECCTKHREMRGLTSAGRSSRG 560
           +GH  RS  Q+ RE   +HR   GL   GRS +G
Sbjct: 322 EGHLERSAQQVRREQSPRHRVFMGLDVFGRSRKG 355


>AE013599-3185|AAG22188.1| 1542|Drosophila melanogaster CG9485-PA,
           isoform A protein.
          Length = 1542

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 187 PKTRLPC*TRLCCIQNPCATWWPKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEE 354
           P   + C T L  +  P  TW PK  VAK A Y       + +L  +R+  S+ ++
Sbjct: 146 PLDSVRCQTVLAKLLGPLDTWEPKLRVAKEAGYNVIHFTPIQELGGSRSCYSLRDQ 201


>AE013599-3184|AAF46713.3| 1546|Drosophila melanogaster CG9485-PC,
           isoform C protein.
          Length = 1546

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 187 PKTRLPC*TRLCCIQNPCATWWPKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEE 354
           P   + C T L  +  P  TW PK  VAK A Y       + +L  +R+  S+ ++
Sbjct: 150 PLDSVRCQTVLAKLLGPLDTWEPKLRVAKEAGYNVIHFTPIQELGGSRSCYSLRDQ 205


>AE013599-3183|AAM70868.2| 1629|Drosophila melanogaster CG9485-PB,
           isoform B protein.
          Length = 1629

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 187 PKTRLPC*TRLCCIQNPCATWWPKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEE 354
           P   + C T L  +  P  TW PK  VAK A Y       + +L  +R+  S+ ++
Sbjct: 233 PLDSVRCQTVLAKLLGPLDTWEPKLRVAKEAGYNVIHFTPIQELGGSRSCYSLRDQ 288


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,760,385
Number of Sequences: 53049
Number of extensions: 749471
Number of successful extensions: 2009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2009
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)