Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30572
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   121   5e-28
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    30   1.5  
Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  121 bits (292), Expect = 5e-28
 Identities = 50/69 (72%), Positives = 63/69 (91%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 224 VFRIRVRRG 250
           V+R+RVRRG
Sbjct: 61  VYRVRVRRG 69



 Score =  104 bits (249), Expect = 7e-23
 Identities = 44/80 (55%), Positives = 58/80 (72%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG TYGKPK+HGVN+LK  ++ Q++AE             +SYWVA+DS+YK++E
Sbjct: 72  KRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYE 131

Query: 436 VILVDPSHKAIRRDPKINWI 495
           V+L+DP HKAIRR+P   WI
Sbjct: 132 VVLIDPFHKAIRRNPDTQWI 151



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAW 617
           KHRE RGLTSAGR SRGLGKG R+S T+GGS+   W
Sbjct: 157 KHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNW 192


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -2

Query: 262 DAWATTSHTDSEYNITLFSTVA*SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNI 92
           DA  T++   SE   T  +T   S+   RP   GS+  T       V+  PHT   T N 
Sbjct: 505 DAMDTSTPRASESRET--TTGNGSTTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNA 562

Query: 91  AQFFPIQLLNISVGTH 44
              F + LLN+S+  H
Sbjct: 563 QYSFMLLLLNVSLFFH 578


>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 521 LTMLSTAFTIQLILGSRRMALCDGSTR-ITSKYLY 420
           L  LST F I +I+ +RR++  D + + +  KY+Y
Sbjct: 200 LLFLSTVFYIPIIISARRLSHVDSAQQCMVQKYIY 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,492,739
Number of Sequences: 27780
Number of extensions: 370619
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)