Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30572
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           114   5e-26
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           114   5e-26
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   5.5  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   9.6  
At3g18050.1 68416.m02296 expressed protein                             27   9.6  
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99...    27   9.6  
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99...    27   9.6  
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99...    27   9.6  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  114 bits (275), Expect = 5e-26
 Identities = 51/70 (72%), Positives = 60/70 (85%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 224 VFRIRVRRGG 253
           V+R+RVRRGG
Sbjct: 61  VYRVRVRRGG 70



 Score =  102 bits (244), Expect = 3e-22
 Identities = 44/82 (53%), Positives = 57/82 (69%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E
Sbjct: 72  KRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYE 131

Query: 436 VILVDPSHKAIRRDPKINWIVN 501
           +ILVDP+H A+R DP+INWI N
Sbjct: 132 IILVDPAHNAVRNDPRINWICN 153



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAW 617
           KHRE+RGLTS G+ +RGL GKGH   + +  SRRA W
Sbjct: 157 KHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATW 192


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  114 bits (275), Expect = 5e-26
 Identities = 51/70 (72%), Positives = 60/70 (85%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 224 VFRIRVRRGG 253
           V+R+RVRRGG
Sbjct: 61  VYRVRVRRGG 70



 Score =  102 bits (244), Expect = 3e-22
 Identities = 44/82 (53%), Positives = 57/82 (69%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E
Sbjct: 72  KRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYE 131

Query: 436 VILVDPSHKAIRRDPKINWIVN 501
           +ILVDP+H A+R DP+INWI N
Sbjct: 132 IILVDPAHNAVRNDPRINWICN 153



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAW 617
           KHRE+RGLTS G+ +RGL GKGH   + +  SRRA W
Sbjct: 157 KHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATW 192


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 397 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 498
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 RVWQYRQLTRMHRAPRPTRPD 181
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 182 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 63
           CP L AW   AY +T  +   S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 433

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 528 GLTSAGRSSRGLGKGHRYSQTKGGSR--RAAWLQTQHF 635
           G +S+  S RG G G RY ++  GS    +AW Q+ ++
Sbjct: 2   GGSSSKESPRGGGSGRRYERSVSGSSSYSSAWDQSSYY 39


>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 453

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 528 GLTSAGRSSRGLGKGHRYSQTKGGSR--RAAWLQTQHF 635
           G +S+  S RG G G RY ++  GS    +AW Q+ ++
Sbjct: 22  GGSSSKESPRGGGSGRRYERSVSGSSSYSSAWDQSSYY 59


>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 433

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 528 GLTSAGRSSRGLGKGHRYSQTKGGSR--RAAWLQTQHF 635
           G +S+  S RG G G RY ++  GS    +AW Q+ ++
Sbjct: 2   GGSSSKESPRGGGSGRRYERSVSGSSSYSSAWDQSSYY 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,654,572
Number of Sequences: 28952
Number of extensions: 346339
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)