Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30571
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    94   5e-21
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    93   1e-20
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    29   0.16 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   0.48 
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.4  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   4.5  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    24   6.0  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 94.3 bits (224), Expect = 5e-21
 Identities = 41/91 (45%), Positives = 66/91 (72%)
 Frame = +2

Query: 8   RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
           +KT YAQ +Q+RAIR+KM ++I    ++  +RE+V KLIP+ I ++IE+A   I+PL++V
Sbjct: 151 KKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNV 210

Query: 188 CIRKVKVLKRPRFEISKLMELHAKAVEARGK 280
            +RKVK+LK P+ +  KL+ELH ++ +   K
Sbjct: 211 LVRKVKILKAPKHDAQKLLELHGESQDVGTK 241


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 93.1 bits (221), Expect = 1e-20
 Identities = 41/91 (45%), Positives = 63/91 (69%)
 Frame = +2

Query: 8   RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
           +KT YAQ +Q+RAI +KM ++I        ++E+V KLIP+ I + IEKA + IYPL++V
Sbjct: 151 KKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNV 210

Query: 188 CIRKVKVLKRPRFEISKLMELHAKAVEARGK 280
            +RKVK+LK P+ +  KL+ELH ++ +   K
Sbjct: 211 FVRKVKILKAPKHDAQKLLELHGESQDVGSK 241


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 212 KRPRFEISKLMELHAKAVEARGKPETSLNG 301
           KRPR + S  +++HA     RG P+T  +G
Sbjct: 114 KRPRRQPSSFLDVHASNTRKRGSPDTPDSG 143


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 65  EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 196
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -3

Query: 244 HQLRDL-ETGPLQHFHLSDANIAQRV-DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACN 71
           H   DL E     H H    +    V +A      V GNG++N L+H+  E   +D +  
Sbjct: 265 HHFCDLSEISKFNHQHSGKPDHPSLVSNASLAPFIVEGNGIKNGLLHYNMETAETDESYT 324

Query: 70  DFTHFLSDCSDLS 32
           D     +   +LS
Sbjct: 325 DLDDTFARLKNLS 337


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 178 ARCLHPKGESVEEAPFRDLEV 240
           +RCL    ++V+EA  RDLE+
Sbjct: 22  SRCLGFAAQNVDEANLRDLEI 42


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 182 DVCIRKVKVLKRPRFEISKLMELHAKAVEARGKPETSLNGRRATSL 319
           ++CIR  ++L+     + +L+  +  AV A G P ++  G   TSL
Sbjct: 160 ELCIRVDELLRDNGPAVLELLVQYVDAVRASGSPSSADLGLVLTSL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,236
Number of Sequences: 5004
Number of extensions: 21890
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)