Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30571
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 101 2e-22
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 100 3e-22
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 99 5e-22
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 1.1
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 3.2
02_05_1308 + 35601314-35601390,35602486-35602566,35603513-356040... 27 4.2
03_06_0083 - 31532213-31532775,31534016-31534043 27 5.6
01_06_1433 - 37331371-37331757 27 5.6
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 26 7.4
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 26 9.8
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 26 9.8
03_04_0046 - 16781020-16781496 26 9.8
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546... 26 9.8
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 26 9.8
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 101 bits (241), Expect = 2e-22
Identities = 44/90 (48%), Positives = 67/90 (74%)
Frame = +2
Query: 8 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNV 210
Query: 188 CIRKVKVLKRPRFEISKLMELHAKAVEARG 277
+RKVK+LK P+F++ KLME+H E G
Sbjct: 211 FVRKVKILKAPKFDLGKLMEVHGDYKEDVG 240
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 100 bits (240), Expect = 3e-22
Identities = 42/82 (51%), Positives = 65/82 (79%)
Frame = +2
Query: 8 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNV 210
Query: 188 CIRKVKVLKRPRFEISKLMELH 253
+RKVK+LK P+F++ KLME+H
Sbjct: 211 FVRKVKILKAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 99 bits (238), Expect = 5e-22
Identities = 44/90 (48%), Positives = 66/90 (73%)
Frame = +2
Query: 8 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V
Sbjct: 151 KRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNV 210
Query: 188 CIRKVKVLKRPRFEISKLMELHAKAVEARG 277
IRKVK+LK P+F++ KLME+H E G
Sbjct: 211 FIRKVKILKAPKFDLGKLMEVHGDYKEDVG 240
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 104 EVVNKLIPDSIAKDIEKACHGIYPLRD 184
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 218 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 102
A++ SPF + GRC PS P S S+ +PPP
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115
>02_05_1308 +
35601314-35601390,35602486-35602566,35603513-35604064,
35604998-35605408,35606830-35607544
Length = 611
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 145 HREGLPWHLPSARCLHPKGESVEEAPFRDLEV 240
H +G W L R L P G +V+ RD E+
Sbjct: 212 HHDGEAWRLKIQRLLPPHGITVKHISDRDTEI 243
>03_06_0083 - 31532213-31532775,31534016-31534043
Length = 196
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 218 PRFEISKLMELHAKAVEARGKPETSLNGRRATSL 319
P F ++ + VEAR +PE S +GRR S+
Sbjct: 85 PEFMVAGTVRGRVGDVEARRRPEISGDGRRGLSM 118
>01_06_1433 - 37331371-37331757
Length = 128
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 218 PRFEISKLMELHAKAVEARGKPETSLNGRRATSL 319
P F ++ + VEAR +PE S +GRR S+
Sbjct: 17 PEFMVAGTVRGRVGDVEARRRPEISGDGRRGLSM 50
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 26.2 bits (55), Expect = 7.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 130 LHCQGHREGLPWHLPSARCL 189
+HCQ H+ G WH + C+
Sbjct: 87 VHCQYHKSGCQWHGNLSDCI 106
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 26 QHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 151
QH Q++ R + + +D N L+ ++ +IP I KD++
Sbjct: 361 QHQQIKETRSPVMPVQVKDAQNQLLKGSLSPVIPVQI-KDVQ 401
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/30 (30%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 53 KKMCEIIT--RDVTNSELREVVNKLIPDSI 136
+++C T +DV +S++++ +NK PD +
Sbjct: 191 QQVCSFYTWRKDVKSSDIKDAINKAAPDKL 220
>03_04_0046 - 16781020-16781496
Length = 158
Score = 25.8 bits (54), Expect = 9.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 229 LETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGV--RNQLVHHLPEFRVSDVA 77
L+ ++ F D A+ VDA LD G+GV R +L L FR+ D A
Sbjct: 6 LDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLDGA 58
>02_01_0729 -
5465521-5466005,5466481-5466793,5466878-5467094,
5467797-5468116
Length = 444
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 118 LVHHLPEFRVSDVACNDFTHFLSDCSDLSVL 26
LVH + VSDV+C H L CSD VL
Sbjct: 260 LVHEVCHVEVSDVSCG-LDHSLVLCSDGIVL 289
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +2
Query: 29 HTQVRAIRKKMCEIITRDVTNSELREVVNKLIP---DSIAKDIE 151
H Q + RK++ ++ + T+S+LRE+ ++L+ ++ +KD++
Sbjct: 1956 HMQSQTKRKQIDHLMELNSTSSQLREIFSELLHHLLNTFSKDVD 1999
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,781
Number of Sequences: 37544
Number of extensions: 164166
Number of successful extensions: 588
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -