Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30571
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         132   6e-32
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               31   0.20 
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.8  
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025)             26   7.7  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         26   7.7  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  132 bits (320), Expect = 6e-32
 Identities = 59/85 (69%), Positives = 75/85 (88%)
 Frame = +2

Query: 8   RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
           +KT YA+HTQ++AIRKKM +IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV
Sbjct: 34  KKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDV 93

Query: 188 CIRKVKVLKRPRFEISKLMELHAKA 262
            IRKVKVLK+P+F+I KLME+H +A
Sbjct: 94  HIRKVKVLKKPKFDIGKLMEMHGEA 118


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +2

Query: 35  QVRAIRKKMCEIITRDVTNS-ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 211
           ++R   +K    +   +TN+  +   +  L+   I ++      G +  RD C R V+ L
Sbjct: 421 ELRRFHRKARVAVEAGITNNAHIHTQITSLLDKHIKRESHSVAIGQHVWRDACGRFVRAL 480

Query: 212 KRPRFEISKLMELHAKAVEARGKPETSL 295
           +R     + +++L  + ++A  +  TSL
Sbjct: 481 RRHSIAHAHVIDLEKQKLDAEREYVTSL 508


>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +2

Query: 11  KTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 190
           K C+ +     ++   +CE   R+V  +     V K + D++  D  K    ++ L  +C
Sbjct: 482 KKCFVEKQAFPSLESCVCEENMREVKGAMDDGAVKKKLNDNLQDDSRK---DVFHLEQIC 538

Query: 191 IRKVK 205
           +  VK
Sbjct: 539 LYPVK 543


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 206 LSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 108
           L P GC  R  G      S  P + +Q STC P
Sbjct: 457 LQPGGCDSRISGGRRKGSSSAPPRGAQRSTCRP 489


>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 136 CQGHREGLP-WHLPSARCLHPKGESVEEAPFR 228
           C G  E L   HLP  +C+  K    E+ PFR
Sbjct: 339 CCGSEESLMLMHLPLQKCIGKKDLGSEQRPFR 370


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 20  YAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCI 193
           +A  +  R      C      +T+   R+VV  L+    AK   K CHG  PL   CI
Sbjct: 357 HANESDARFCNAVFCMTFVVTLTSIYERQVVELLLNHK-AKINVKDCHGNTPLHFCCI 413


>SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025)
          Length = 435

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 11  KTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 190
           K  +++    + +R+K  +I+T   + S + EVV +L       DI+ A   I+ +  + 
Sbjct: 137 KMFFSRFNDPQFLRRKKLQILTTISSESNVEEVVTELSASVHDVDIDLAKESIHAIGQIA 196

Query: 191 I 193
           +
Sbjct: 197 L 197


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 158 RPSRCPWQWSQESTCSPPP 102
           RP R P++W +    +PPP
Sbjct: 583 RPQRRPYRWKRAKPTTPPP 601


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,945,048
Number of Sequences: 59808
Number of extensions: 180548
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)