Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30571
         (354 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   128   5e-32
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   1.9  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   2.5  
AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding pr...    23   4.4  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    22   5.9  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    22   7.8  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  128 bits (310), Expect = 5e-32
 Identities = 58/84 (69%), Positives = 72/84 (85%)
 Frame = +2

Query: 2   SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 181
           SQRKTCYAQH+Q++ IR KM  II R++T+++L+ VV KL+PDSIAKDIEKAC  +YPL 
Sbjct: 152 SQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLH 211

Query: 182 DVCIRKVKVLKRPRFEISKLMELH 253
           DV IRKVKVLK+PRF++S LMELH
Sbjct: 212 DVYIRKVKVLKKPRFDLSSLMELH 235



 Score = 30.3 bits (65), Expect = 0.022
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +1

Query: 298 RPEGYEPPVQESV 336
           RPEGYEPPVQ SV
Sbjct: 257 RPEGYEPPVQASV 269


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 199 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 113
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 224 NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 108
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


>AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP29 protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 50  RKKMCEIITRDVTNSELRE 106
           + K+  +IT+D+   ELRE
Sbjct: 106 KHKVLHVITKDIREHELRE 124


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 306 LRPFRLVSGFP 274
           LRP RLVSG P
Sbjct: 220 LRPLRLVSGVP 230


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 190 ANIAQRVDAMAGLLDVLGNGVRNQLV 113
           A   QR++    L D++GN  RN+++
Sbjct: 568 ARSLQRINIPKYLYDIIGNYFRNRVL 593


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,418
Number of Sequences: 2352
Number of extensions: 6215
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25794900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)