Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30571
(354 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 125 1e-29
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 125 1e-29
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 125 1e-29
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 125 1e-29
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 119 9e-28
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 49 1e-06
AY051866-1|AAK93290.1| 332|Drosophila melanogaster LD36157p pro... 30 0.74
AE014298-2587|AAF48743.1| 332|Drosophila melanogaster CG8326-PA... 30 0.74
AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-P... 29 2.2
AE014297-2138|AAF55266.1| 259|Drosophila melanogaster CG10407-P... 27 6.9
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 125 bits (302), Expect = 1e-29
Identities = 61/94 (64%), Positives = 77/94 (81%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 181
SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL
Sbjct: 152 SQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLH 211
Query: 182 DVCIRKVKVLKRPRFEISKLMELH----AKAVEA 271
DV IRKVKVLK+PRF++SKL+ELH K+VEA
Sbjct: 212 DVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEA 245
Score = 32.3 bits (70), Expect = 0.18
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 295 ERPEGYEPPVQESV 336
+RPEGYEPPVQE+V
Sbjct: 255 DRPEGYEPPVQEAV 268
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 125 bits (302), Expect = 1e-29
Identities = 61/94 (64%), Positives = 77/94 (81%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 181
SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL
Sbjct: 47 SQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLH 106
Query: 182 DVCIRKVKVLKRPRFEISKLMELH----AKAVEA 271
DV IRKVKVLK+PRF++SKL+ELH K+VEA
Sbjct: 107 DVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEA 140
Score = 32.3 bits (70), Expect = 0.18
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 295 ERPEGYEPPVQESV 336
+RPEGYEPPVQE+V
Sbjct: 150 DRPEGYEPPVQEAV 163
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 125 bits (302), Expect = 1e-29
Identities = 61/94 (64%), Positives = 77/94 (81%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 181
SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL
Sbjct: 102 SQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLH 161
Query: 182 DVCIRKVKVLKRPRFEISKLMELH----AKAVEA 271
DV IRKVKVLK+PRF++SKL+ELH K+VEA
Sbjct: 162 DVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEA 195
Score = 32.3 bits (70), Expect = 0.18
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 295 ERPEGYEPPVQESV 336
+RPEGYEPPVQE+V
Sbjct: 205 DRPEGYEPPVQEAV 218
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 125 bits (302), Expect = 1e-29
Identities = 61/94 (64%), Positives = 77/94 (81%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 181
SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL
Sbjct: 152 SQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLH 211
Query: 182 DVCIRKVKVLKRPRFEISKLMELH----AKAVEA 271
DV IRKVKVLK+PRF++SKL+ELH K+VEA
Sbjct: 212 DVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEA 245
Score = 32.3 bits (70), Expect = 0.18
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 295 ERPEGYEPPVQESV 336
+RPEGYEPPVQE+V
Sbjct: 255 DRPEGYEPPVQEAV 268
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 119 bits (287), Expect = 9e-28
Identities = 60/95 (63%), Positives = 76/95 (80%), Gaps = 5/95 (5%)
Frame = +2
Query: 2 SQRKTCYAQHTQVRAIRK-KMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPL 178
SQRKTCYA +QVR IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL
Sbjct: 153 SQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPL 212
Query: 179 RDVCIRKVKVLKRPRFEISKLMELH----AKAVEA 271
DV IRKVKVLK+PRF++SKL+ELH K+VEA
Sbjct: 213 HDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEA 247
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/37 (54%), Positives = 31/37 (83%)
Frame = +2
Query: 2 SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVV 112
SQRKTCYAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 152 SQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188
>AY051866-1|AAK93290.1| 332|Drosophila melanogaster LD36157p
protein.
Length = 332
Score = 30.3 bits (65), Expect = 0.74
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 86 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHAKAV 265
T+ + VN++ S+ + +A +G+ +R+ ++ V KRP+ EI +L++ K
Sbjct: 103 TDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNEIDELLKQKQKEQ 162
Query: 266 EARGK 280
GK
Sbjct: 163 RLAGK 167
>AE014298-2587|AAF48743.1| 332|Drosophila melanogaster CG8326-PA
protein.
Length = 332
Score = 30.3 bits (65), Expect = 0.74
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 86 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHAKAV 265
T+ + VN++ S+ + +A +G+ +R+ ++ V KRP+ EI +L++ K
Sbjct: 103 TDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNEIDELLKQKQKEQ 162
Query: 266 EARGK 280
GK
Sbjct: 163 RLAGK 167
>AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-PA
protein.
Length = 632
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 196 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 44
+ AN+ M LLD++ GV L+H E V + ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314
>AE014297-2138|AAF55266.1| 259|Drosophila melanogaster CG10407-PA
protein.
Length = 259
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 152 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHAKAVEARGKPETSLN 298
K CH P D C+R+ RPR + + EL+ A+E P+ ++
Sbjct: 39 KVCHRNAPDLDTCVRESYEELRPRL-MEGIPELYIPAMEPLVVPQVKMD 86
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,676
Number of Sequences: 53049
Number of extensions: 268240
Number of successful extensions: 756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 859222404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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