Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30571
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           106   5e-24
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   103   5e-23
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    30   0.51 
At5g44290.1 68418.m05421 protein kinase family protein contains ...    27   3.6  
At5g38550.1 68418.m04661 jacalin lectin family protein similar t...    27   3.6  
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    27   3.6  
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg...    27   4.7  
At5g28080.1 68418.m03391 protein kinase family protein contains ...    26   6.3  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    26   6.3  
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    26   6.3  
At5g62520.1 68418.m07847 expressed protein                             26   8.3  
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf...    26   8.3  
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf...    26   8.3  
At4g11720.1 68417.m01870 hypothetical protein                          26   8.3  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  106 bits (254), Expect = 5e-24
 Identities = 44/82 (53%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
           ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V
Sbjct: 151 KRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNV 210

Query: 188 CIRKVKVLKRPRFEISKLMELH 253
            IRKVK+LK P+F++ KLME+H
Sbjct: 211 FIRKVKILKAPKFDLGKLMEVH 232


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  103 bits (246), Expect = 5e-23
 Identities = 42/82 (51%), Positives = 68/82 (82%)
 Frame = +2

Query: 8   RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDV 187
           ++TCYAQ +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V
Sbjct: 151 KRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNV 210

Query: 188 CIRKVKVLKRPRFEISKLMELH 253
            IRKVK+LK P+F++ KLM++H
Sbjct: 211 FIRKVKILKAPKFDLGKLMDVH 232


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 187 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGV 20
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S + +
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEINL 480


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 167 IYPLRDVCIRKVKVLKRPRFEISKLMELHAKAVE 268
           +Y  RD+   K+  LKR RF++S L  +   A E
Sbjct: 151 VYKARDLTNNKIVALKRVRFDLSDLESVKFMARE 184


>At5g38550.1 68418.m04661 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 594

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 130 LHCQGHREGLPW 165
           L CQG R+GLPW
Sbjct: 299 LECQGDRKGLPW 310


>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 169 DAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSD 38
           D    +LD+LGN V+    H  P   V+D+  +    ++  CSD
Sbjct: 78  DGTVRILDLLGNQVKEFRAHTAP---VNDINFDTEGEYIGSCSD 118


>At1g78700.1 68414.m09173 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 325

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = -2

Query: 203 SPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP--PP 102
           +PFG K  A     G      W   Q  TCSP  PP
Sbjct: 234 NPFGFKEEAASAAGGGGGSRMWTPGQSGTCSPAIPP 269


>At5g28080.1 68418.m03391 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 406

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 208 HFHLSDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEF 95
           HF   D +  +RV++  GL+D  G  +R+   +H+P +
Sbjct: 194 HFLCIDESDMRRVESEKGLIDEAGTPLRHS--YHIPHY 229


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 187 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFT 62
           +IAQRV  +AG+  +    +    V  LP F    V C+D T
Sbjct: 432 SIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDAT 473


>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 12  RRATPSTLRSEQSER-KCVKSLHATSLTLN 98
           R+ATPSTLRS + ++   V+++  TS+ ++
Sbjct: 377 RKATPSTLRSRKGKKVSSVRNVAGTSVKMS 406


>At5g62520.1 68418.m07847 expressed protein
          Length = 309

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 32  TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKAC 160
           +Q+  I+K   +   R +T SEL + V  +  D +   I KAC
Sbjct: 261 SQILVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKAC 303


>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 698

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 224 FEISKLMELHAKAVEARGKPETSLNGRRAT 313
           FE+SKL EL   AVE  G   + ++ R+ T
Sbjct: 301 FEVSKLSELRPVAVEKDGITGSLMSPRKTT 330


>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 694

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 224 FEISKLMELHAKAVEARGKPETSLNGRRAT 313
           FE+SKL EL   AVE  G   + ++ R+ T
Sbjct: 301 FEVSKLSELRPVAVEKDGITGSLMSPRKTT 330


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 29  HTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 199
           H Q   + +KM  ++ RD ++S     ++++  DS  K   +A HGI   RDV + +
Sbjct: 595 HGQDDDVLQKM--MLERDHSDSHYYHQLHRVHKDSKQKQRRRAKHGIVLPRDVHVER 649


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,821,311
Number of Sequences: 28952
Number of extensions: 120434
Number of successful extensions: 414
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)