Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30569
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.71 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.2  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   3.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   6.6  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   8.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.7  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 485 NSLTQYCFGLYTHTRHTVNNH 423
           N  T++     THTRHT  +H
Sbjct: 267 NRFTRHLIQRRTHTRHTTTSH 287


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 96  VADIPLLVHHPTDLVYREIHHF 31
           V  + L++H  T L+YR   HF
Sbjct: 678 VIGMNLIIHVGTQLIYRPFSHF 699


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = -3

Query: 332 FLTLFTLVRVCDEY*IFLFKLEEHRDAVDLMVMQRSCSSLRVSVKRVSPAL 180
           F  L+ L+ +C+    F  + +   + + + +  ++C+S  + V+++S  L
Sbjct: 175 FCYLWVLILICNIALAFKQRYQLINEQMAVRINPKNCASFVIEVRKLSRLL 225


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 94  CGYSASCPSSHGSRLP*NSPF*MVYDF 14
           CG+    PS HG      +P+   YD+
Sbjct: 467 CGFGPWKPSMHGGVCDPYTPWHTFYDY 493


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 559 RTIPERFQAYCRKC 600
           R +PE  Q  C KC
Sbjct: 62  RVLPEALQTNCAKC 75


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 559 RTIPERFQAYCRKC 600
           R IPE  Q  C KC
Sbjct: 62  RDIPEALQNECAKC 75


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 613 YNDVNIFYNTPGNVL 569
           YN+  +  + PGNVL
Sbjct: 130 YNESRVMMSPPGNVL 144


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 613 YNDVNIFYNTPGNVL 569
           YN+  +  + PGNVL
Sbjct: 130 YNESRVMMSPPGNVL 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,147
Number of Sequences: 336
Number of extensions: 3071
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)