Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30569
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 113 3e-26
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 113 3e-26
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 72 8e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 55 1e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 50 4e-07
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 45 1e-05
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 42 1e-04
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.005
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.020
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.020
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.020
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.33
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.1
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.1
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.1
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 9.4
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 9.4
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 9.4
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 113 bits (271), Expect = 3e-26
Identities = 53/74 (71%), Positives = 62/74 (83%)
Frame = +1
Query: 34 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 213
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 214 KDEQDRCITIKSTA 255
DEQ+R +TIKSTA
Sbjct: 61 ADEQERGVTIKSTA 74
Score = 89.8 bits (213), Expect = 3e-19
Identities = 48/86 (55%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 ISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 431
IS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 75 ISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
Query: 432 XXXXXXXXQTETVLRQAIAERIKPIL 509
QTETVLRQA+ ERI+P++
Sbjct: 130 DTIEGVCVQTETVLRQALGERIRPVV 155
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 113 bits (271), Expect = 3e-26
Identities = 53/74 (71%), Positives = 62/74 (83%)
Frame = +1
Query: 34 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 213
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 214 KDEQDRCITIKSTA 255
DEQ+R +TIKSTA
Sbjct: 61 ADEQERGVTIKSTA 74
Score = 89.8 bits (213), Expect = 3e-19
Identities = 48/86 (55%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 ISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 431
IS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 75 ISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
Query: 432 XXXXXXXXQTETVLRQAIAERIKPIL 509
QTETVLRQA+ ERI+P++
Sbjct: 130 DTIEGVCVQTETVLRQALGERIRPVV 155
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 71.7 bits (168), Expect = 8e-14
Identities = 33/68 (48%), Positives = 48/68 (70%)
Frame = +1
Query: 52 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 231
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 232 CITIKSTA 255
IT+KS+A
Sbjct: 67 GITMKSSA 74
Score = 71.7 bits (168), Expect = 8e-14
Identities = 37/71 (52%), Positives = 47/71 (66%)
Frame = +3
Query: 297 ITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLR 476
+ + + ++ EK +LINLIDSPGHVDFSSEV++A R+ DGA QT TVLR
Sbjct: 81 VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLR 140
Query: 477 QAIAERIKPIL 509
QA +RIK IL
Sbjct: 141 QAWIDRIKVIL 151
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/59 (47%), Positives = 35/59 (59%)
Frame = +3
Query: 303 NPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 479
N Q+ EK + IN+ID+PGH+DF+ EV ALRV DGA+ QT TV RQ
Sbjct: 134 NEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQ 192
Score = 38.7 bits (86), Expect = 7e-04
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Frame = +1
Query: 40 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAR--AGETRF-- 201
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I G+
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGA 100
Query: 202 -TDTRKDEQDRCITIKSTASLCS 267
D + E+++ ITI+S A+ C+
Sbjct: 101 KMDFMELEREKGITIQSAATHCT 123
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 49.6 bits (113), Expect = 4e-07
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = +1
Query: 58 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 237
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 238 TIKSTASLCS 267
T+K A CS
Sbjct: 107 TVK--AQTCS 114
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAER--IKP 503
+ +L+NLID+PGHVDF +EV +L +G + QT + A ++ I P
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIP 181
Query: 504 ILS 512
+L+
Sbjct: 182 VLN 184
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 342 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 509
INLID+PGH DF+ EV ++ V DGA+ QT+ V +QA I ++
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGIPKVI 150
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 85 NIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCITIKSTA 255
+IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R ITI S A
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITINSAA 85
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 509
K F ID+PGHVDF EV A + ++DG + T +++ AI + +L
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVL 266
Query: 510 S*TKWTVLFLSSNL 551
K L L L
Sbjct: 267 VLNKVDRLILELRL 280
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 64 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCIT 240
G++ ++R+ V H+ HGKS L D LV + R+TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 241 IKST-ASLCSSSLKRK 285
IKST +L S +K K
Sbjct: 192 IKSTPLTLAVSDMKGK 207
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 76 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 249
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISS 106
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = +3
Query: 351 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 509
+D PGH D+ + DGA+ QT L A +K I+
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQTREHLLLARQVGVKQIV 173
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.33
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 296
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 295 NTKSFSSSSKNIEMP 251
++ S SSSS + +P
Sbjct: 195 SSSSSSSSSSSSSVP 209
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -1
Query: 475 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 296
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 295 NTKSFSSSSKN 263
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 97 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 198
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGII 171
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 293
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 292 TKSFSSSSKN 263
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 85 SASCPSSHGSRLP*NSPF*MVYDFCSIK 2
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 119 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 226
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSL 150
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 13 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 171
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEI 204
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 385 K*QLHSVSLMEPLWLLTVCLVCVYKPKQYCVRLLPSASSLF 507
K Q+H +SL + W +T + C P +C + S + ++
Sbjct: 120 KNQVHLLSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIY 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,049
Number of Sequences: 5004
Number of extensions: 52034
Number of successful extensions: 186
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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