Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30569
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 140 7e-34
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 34 0.087
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.26
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.61
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.61
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 4.3
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_35209| Best HMM Match : Ank (HMM E-Value=0) 28 5.7
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8) 27 9.9
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 140 bits (340), Expect = 7e-34
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = +1
Query: 37 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 216
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 217 DEQDRCITIKSTA 255
DEQDRCITIKSTA
Sbjct: 61 DEQDRCITIKSTA 73
Score = 116 bits (278), Expect = 2e-26
Identities = 62/112 (55%), Positives = 75/112 (66%)
Frame = +3
Query: 255 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 434
IS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 74 ISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 435 XXXXXXXQTETVLRQAIAERIKPILS*TKWTVLFLSSNLKLKNYTRTFPGVL 590
QTETVLRQAIAERIKP+L K L L ++ +TF ++
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIV 183
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +1
Query: 88 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 249
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 378 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 509
+ +V+ A+R+ DGAL QT VLRQA E I+P L
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCL 64
Score = 34.3 bits (75), Expect = 0.087
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 384 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 509
+V+ A+R+ DGAL QT VLRQA E I+P L
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCL 134
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 97 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 198
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +3
Query: 321 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 500
K G I ID+PGH F+S VTD + QT +R A+ ++
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
Query: 501 PILS*TK 521
I++ K
Sbjct: 131 LIVAINK 137
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +1
Query: 34 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 213
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 214 K 216
+
Sbjct: 172 R 172
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 97 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 198
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 342 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVL 473
IN++D+PGH DF+ + L D + QTE ++
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLV 124
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 73 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 186
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -1
Query: 454 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 284
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 283 FSSSSK 266
SS K
Sbjct: 672 MGSSDK 677
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 415 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 293
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 332
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 454 THTPDTQSTTTRAPSVTRSAAVTSEEKST 368
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 454 THTPDTQSTTTRAPSVTRSAAVTSEEKST 368
T TP+TQSTTT P T+S T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417
>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 416 SPCGC*LCVWCVCTNR 463
SPC C+WC C+ R
Sbjct: 18 SPCALYFCIWCECSKR 33
>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
Length = 787
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 211 RKDEQDRCITIKSTASLCSSSL 276
R +EQD C + +T +LCSSSL
Sbjct: 733 RSNEQDFCGIVYNTTNLCSSSL 754
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 127 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRC-ITIKSTASLCSSSLKR 282
K+ + D+LV GI+ R G +TD + +R + + SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234
>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
Length = 845
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 553 FKLELKKSTVHFVHERIGLMRSAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEK 374
++L+LK S + F RIG+ +S ++S+ H P T T ++ +T+E +
Sbjct: 66 YRLQLKTS-LGFCRSRIGIQKSTKHGSYSLSIPGHDPPTDITIFLGVAINPGPMLTTERE 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,374,434
Number of Sequences: 59808
Number of extensions: 416923
Number of successful extensions: 1392
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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