Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30569
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 146 2e-35
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 146 2e-35
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 66 2e-11
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 58 5e-09
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 58 5e-09
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 49 2e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 48 6e-06
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 39 0.003
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 39 0.003
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 39 0.003
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.043
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.043
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.23
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.23
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.23
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.23
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.23
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.30
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 32 0.40
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.53
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.93
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 31 0.93
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.6
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.6
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 2.8
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.8
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.8
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 3.8
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 28 6.6
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 27 8.7
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 27 8.7
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 8.7
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 146 bits (353), Expect = 2e-35
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = +1
Query: 34 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 213
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 214 KDEQDRCITIKSTASLCSSSLKRK 285
KDEQ+RCITIKSTA L++K
Sbjct: 61 KDEQERCITIKSTAISLFFELEKK 84
Score = 114 bits (274), Expect = 6e-26
Identities = 68/120 (56%), Positives = 77/120 (64%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 ISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTAALRVT 410
IS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTAALRVT
Sbjct: 75 ISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVT 134
Query: 411 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILS*TKWTVLFLSSNLKLKNYTRTFPGVL 590
DGAL QTETVLRQAIAERIKP+L K L L + +TF ++
Sbjct: 135 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIV 194
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 509 FMNKMDRXXXXXXXXXXXXYQNVSRRIVENVNVII 613
FMNKMDR +Q +RIVEN+NVII
Sbjct: 168 FMNKMDRALLELQLGAEELFQTF-QRIVENINVII 201
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 146 bits (353), Expect = 2e-35
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = +1
Query: 34 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 213
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 214 KDEQDRCITIKSTASLCSSSLKRK 285
KDEQ+RCITIKSTA L++K
Sbjct: 61 KDEQERCITIKSTAISLFFELEKK 84
Score = 111 bits (267), Expect = 4e-25
Identities = 67/120 (55%), Positives = 76/120 (63%), Gaps = 8/120 (6%)
Frame = +3
Query: 255 ISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTAALRVT 410
IS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTAAL VT
Sbjct: 75 ISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVT 134
Query: 411 DGALXXXXXXXXXXXQTETVLRQAIAERIKPILS*TKWTVLFLSSNLKLKNYTRTFPGVL 590
DGAL QTETVLRQAIAERIKP+L K L L + +TF ++
Sbjct: 135 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIV 194
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 509 FMNKMDRXXXXXXXXXXXXYQNVSRRIVENVNVII 613
FMNKMDR +Q +RIVEN+NVII
Sbjct: 168 FMNKMDRALLELQLGAEELFQTF-QRIVENINVII 201
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = +1
Query: 85 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 252
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSS 74
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +3
Query: 339 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 485
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVI 132
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = +1
Query: 85 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 252
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSS 74
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +3
Query: 339 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 485
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVI 132
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 58.0 bits (134), Expect = 5e-09
Identities = 34/87 (39%), Positives = 46/87 (52%)
Frame = +3
Query: 291 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 470
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 245
Query: 471 LRQAIAERIKPILS*TKWTVLFLSSNL 551
+R AI ER+ L +K L L L
Sbjct: 246 IRHAIQERLAVTLCISKIDRLLLELKL 272
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 67 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITI 243
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 244 KS 249
KS
Sbjct: 185 KS 186
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 58.0 bits (134), Expect = 5e-09
Identities = 34/87 (39%), Positives = 46/87 (52%)
Frame = +3
Query: 291 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 470
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 120
Query: 471 LRQAIAERIKPILS*TKWTVLFLSSNL 551
+R AI ER+ L +K L L L
Sbjct: 121 IRHAIQERLAVTLCISKIDRLLLELKL 147
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITIK 246
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 247 S 249
S
Sbjct: 61 S 61
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +1
Query: 88 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS-TASL 261
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ TA+L
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL 97
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 422
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGIL 130
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/49 (53%), Positives = 30/49 (61%)
Frame = +3
Query: 333 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 479
G IN+ID+PGHVDF+ EV ALRV DGA+ QT TV RQ
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQ 159
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 88 IRNMSVIAHVDHGKSTLTDSLVSKAGII 171
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 482
KG INLID+PGHVDF EV +RV DG + QT TV RQ+
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQS 138
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +1
Query: 88 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTA 255
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAA 82
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 249
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 102
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 249
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 249
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTASLCSSS 273
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 274 LKR 282
L+R
Sbjct: 107 LRR 109
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTASLCSSS 273
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 274 LKR 282
L+R
Sbjct: 107 LRR 109
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -1
Query: 490 SAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 311
+AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 310 SGFVMNTK 287
V K
Sbjct: 751 KAIVNKFK 758
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 31.9 bits (69), Expect = 0.40
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +1
Query: 19 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 195
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 196 RFTDTRKDEQDRCITIKSTASLCSSSLKRKI*YSSQTLTSV 318
R +QD + +A L + R+ T+TS+
Sbjct: 670 TIEKQRVQQQDGGNLMDLSALLTNQVRNRESAARRPTITSI 710
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 73 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 198
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 332
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 335
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 449 HTRHTVNNHKGSISDTECSCYFRREINV 366
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 442 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 347
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 362
ST + T T T +TTT AP+ T + T+E P
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIP 246
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 121 DRRGRSQTCCGYSASCPSSHG 59
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 121 DRRGRSQTCCGYSASCPSSHG 59
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 36 GEFHGRRDPWDDGQEAEYPQHVCDR 110
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 36 GEFHGRRDPWDDGQEAEYPQHVCDR 110
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -1
Query: 454 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 320
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 383
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 383
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 475 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 368
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 368
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 332
+T T T T TTT+AP T + A T+ + C S ++ P
Sbjct: 74 TTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDP 120
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 228
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 228
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 445 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 272
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 82 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 171
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 82 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 171
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 464 FGLYTHTRHTVNNHKGSISDTECS 393
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 464 FGLYTHTRHTVNNHKGSISDTECS 393
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 100 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTASLCSSSLK 279
+++ D GK+TL ++L S AG G A +F TR+ C I SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 280 RKI*Y 294
R + Y
Sbjct: 111 RSLLY 115
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 445 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 272
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1
Query: 448 TPDTQSTTTRAPSVTRSAAVTSEEKSTCP-GESIKLIKKPFSLFSRWSGFVMNTKSFSSS 272
TPD ++TTT P+ T++ + +E+ + G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 271 SKN 263
S N
Sbjct: 216 SGN 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,195
Number of Sequences: 27780
Number of extensions: 305446
Number of successful extensions: 1285
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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