Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30569
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 108 3e-24
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 64 1e-10
At5g13650.2 68418.m01585 elongation factor family protein contai... 60 2e-09
At5g13650.1 68418.m01584 elongation factor family protein contai... 58 7e-09
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 55 5e-08
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 54 8e-08
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 54 8e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 53 2e-07
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 51 6e-07
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 49 2e-06
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 3e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 3e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 48 5e-06
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 36 0.031
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 32 0.29
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 32 0.29
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 32 0.29
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 32 0.29
At1g58220.1 68414.m06612 myb family transcription factor contain... 31 0.50
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 31 0.87
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 31 0.87
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 30 1.2
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 30 1.5
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 30 1.5
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 29 2.7
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 3.5
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 28 4.7
At3g28790.1 68416.m03593 expressed protein 27 8.1
At1g12080.2 68414.m01397 expressed protein 27 8.1
At1g12080.1 68414.m01396 expressed protein 27 8.1
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 108 bits (260), Expect = 3e-24
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = +1
Query: 34 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 213
MV FT DE+R +MD K NIRNMSVIAHVDHGKSTLTDSLV+ AGIIA AG+ R TDTR
Sbjct: 1 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
Query: 214 KDEQDRCITIKST 252
DE +R ITIKST
Sbjct: 61 ADEAERGITIKST 73
Score = 98.3 bits (234), Expect = 4e-21
Identities = 55/113 (48%), Positives = 73/113 (64%)
Frame = +3
Query: 252 GISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 431
GIS+++E+ ++ L T R+ +E +LINLIDSPGHVDFSSEVTAALR+TDGAL
Sbjct: 74 GISLYYEMTDESLKSFTGA--RDGNE--YLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Query: 432 XXXXXXXXQTETVLRQAIAERIKPILS*TKWTVLFLSSNLKLKNYTRTFPGVL 590
QTETVLRQA+ ERI+P+L+ K FL + + +TF V+
Sbjct: 130 DCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVI 182
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 509
K + +NLIDSPGH+DF SEV+ A R++DGAL QT VLRQA E++ P L
Sbjct: 72 KDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCL 131
Query: 510 S*TKWTVLFLSSNLK-LKNYTR 572
K L L ++ YTR
Sbjct: 132 VLNKIDRLIFELRLSPMEAYTR 153
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Frame = +1
Query: 82 RNIRNMSVIAHVDHGKSTLTDSLV--SKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 255
R +RN+ ++AHVDHGK+TL D L+ S G++ AG+ RF D +EQ R IT+KS++
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITMKSSS 66
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/75 (36%), Positives = 48/75 (64%)
Frame = +1
Query: 25 PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT 204
PS +V+ + +D++ N+RN++++AHVDHGK+TL DS++ +A + + + R
Sbjct: 62 PSTAEPASVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIM 121
Query: 205 DTRKDEQDRCITIKS 249
D+ E++R ITI S
Sbjct: 122 DSNDLERERGITILS 136
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 485
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 144 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 195
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/60 (40%), Positives = 42/60 (70%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 249
+D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E++R ITI S
Sbjct: 76 LDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERERGITILS 135
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 485
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 143 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 194
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = +1
Query: 85 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAS 258
NIRN S+IAH+DHGKSTL D L+ G + R + +F D E++R ITIK A+
Sbjct: 85 NIRNFSIIAHIDHGKSTLADKLLQVTGTVQN-RDMKEQFLDNMDLERERGITIKLQAA 141
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 336 FLINLIDSPGHVDFSSEVTAALRVTDGAL 422
F +NLID+PGHVDFS EV+ +L +GAL
Sbjct: 152 FCLNLIDTPGHVDFSYEVSRSLAACEGAL 180
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +3
Query: 318 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERI 497
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI + +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHL 262
Query: 498 KPIL 509
PI+
Sbjct: 263 -PIV 265
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 64 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 234
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 235 ITIKS 249
I+IK+
Sbjct: 190 ISIKA 194
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +3
Query: 318 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERI 497
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI + +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHL 262
Query: 498 KPIL 509
PI+
Sbjct: 263 -PIV 265
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 64 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 234
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 235 ITIKS 249
I+IK+
Sbjct: 190 ISIKA 194
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 342 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 482
IN+ID+PGHVDF+ EV ALRV DGA+ Q+ETV RQA
Sbjct: 163 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA 209
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +1
Query: 82 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE----TRFTDTRKDEQDRCITIKS 249
++ RN+ ++AH+D GK+T T+ ++ G + GE T D + EQ+R ITI S
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG--RNYKIGEVHEGTATMDWMEQEQERGITITS 151
Query: 250 TAS 258
A+
Sbjct: 152 AAT 154
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +3
Query: 318 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERI 497
+ K +L N++D+PG+V+FS E+TA+LR+ DGA+ TE +R AI + +
Sbjct: 189 DSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAIQDHL 248
Query: 498 KPIL 509
PI+
Sbjct: 249 -PIV 251
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 64 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 234
G+M +RN++++ H+ HGK+ D LV + ++ A R+TDTR DEQ+R
Sbjct: 116 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDKHMRYTDTRVDEQERN 175
Query: 235 ITIKS 249
I+IK+
Sbjct: 176 ISIKA 180
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +1
Query: 88 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS-TASL 261
IRN S+IAH+DHGKSTL D L+ G I G+ ++ D K +++R IT+K+ TA++
Sbjct: 66 IRNFSIIAHIDHGKSTLADRLMELTGTIKKGH-GQPQYLD--KLQRERGITVKAQTATM 121
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 318 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 422
++ G+L+NLID+PGHVDFS EV+ +L GAL
Sbjct: 129 DQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGAL 163
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 479
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AGARAGETRFTDTRKDEQDRC 234
MDK +RN+ + AH+D GK+TLT+ ++ G I R G D+ E+++
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG 118
Query: 235 ITIKSTASLCS 267
ITI+S A+ C+
Sbjct: 119 ITIQSAATYCT 129
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 330 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 479
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AGARAGETRFTDTRKDEQDRC 234
MDK +RN+ + AH+D GK+TLT+ ++ G I R G D+ E+++
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG 118
Query: 235 ITIKSTASLCS 267
ITI+S A+ C+
Sbjct: 119 ITIQSAATYCT 129
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +1
Query: 40 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKD 219
+FTV RG ++K+ N+ I HVDHGK+TLT +L I + A + D +
Sbjct: 63 SFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPE 122
Query: 220 EQDRCITIKS 249
E+ R ITI +
Sbjct: 123 ERARGITINT 132
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 35.5 bits (78), Expect = 0.031
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTASLCSSS 273
N+ I HVDHGK+TLT ++ A+A D +E+ R ITI +TA + +
Sbjct: 69 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI-ATAHVEYET 127
Query: 274 LKR 282
KR
Sbjct: 128 AKR 130
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 70 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 165
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 107 SPTSITASQPSRTRWFPRPVSLLVREPERPVSLT-RVRTNKTVASPLNLRH 256
SP + + FPRP S+L PV + TN PLNLRH
Sbjct: 551 SPKAELVKSAASAASFPRPSSMLSAPKADPVKIVPAAATNTKSVGPLNLRH 601
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 469 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 371
T S T PD ST T APSVT+ + + EK+
Sbjct: 383 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 415
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 469 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 371
T S T PD ST T APSVT+ + + EK+
Sbjct: 644 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 676
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 97 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 198
++++ HVDHGK+TL D + K+ + A G T+
Sbjct: 504 ITIMGHVDHGKTTLLD-YIRKSKVAASEAGGITQ 536
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 107 SPTSITASQPSRTRWFPRPVSLLVRE 184
SP+S T+++P R RW P+P +L+ E
Sbjct: 9 SPSS-TSTEPVRARWSPKPEQILILE 33
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 94 NMSVIAHVDHGKSTLTDSLVSKAGIIA 174
N++++ HVD GKSTL+ L+ G I+
Sbjct: 241 NLAIVGHVDSGKSTLSGRLLHLLGRIS 267
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 107 SPTSITASQPSRTRWFPRPVSLLVRE 184
S + T+++P R+RW P+P +L+ E
Sbjct: 20 SASGSTSAEPVRSRWSPKPEQILILE 45
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 97 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 189
++V+ HVDHGK++L D+L + + +A AG
Sbjct: 222 VTVMGHVDHGKTSLLDALRNTS--VAAREAG 250
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 491 LGNSLTQYCFGLYTHTRHTVNNHKGSISDTECSCYFRREIN 369
L N + C Y HTV HKGS D +C ++RE N
Sbjct: 299 LSNRSSDRCRSKY-QLIHTVRTHKGS-DDNAFNCVYQREDN 337
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 8.1
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = -1
Query: 472 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 293
ST + T TP T + +T APS T +A TSE+ S + K S S SG V
Sbjct: 294 STPTPSTPTPSTPTPSTPAPS-TPAAGKTSEKGSESASMKKESNSKSES-ESAASGSVSK 351
Query: 292 TKSFSSSS 269
TK + S
Sbjct: 352 TKETNKGS 359
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 460 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 368
V T TP + +A VT + AV EEK T
Sbjct: 85 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 115
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 460 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 368
V T TP + +A VT + AV EEK T
Sbjct: 51 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,024
Number of Sequences: 28952
Number of extensions: 280363
Number of successful extensions: 935
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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