Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30568
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   1.2  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    28   1.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.6  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   3.6  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   6.3  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   6.3  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   8.3  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 LDVGTYGYDNVTNVCPYTLNVF 487
           L+ G +G D V  VCP+  N+F
Sbjct: 451 LNSGAFGLDEVFQVCPFKSNIF 472


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 532 LVVTRIYGDLISVQVKYIERVRAHICNVVVS 440
           L++ R+Y     +++K++ R+  H+C V +S
Sbjct: 328 LILQRLYSTNNELRIKFLGRLLGHVCGVQIS 358


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 114 NVVDWNYPDQFSKQQALRT-GALIPENALPVGIERW-RNKLFV 236
           +++ WN P QF  +Q L     L P   L + +ER  R K+FV
Sbjct: 74  DLIQWNDPSQFDNEQFLNALAVLFPR--LSIEVERHVRLKIFV 114


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +2

Query: 20  LSK*NGSEVFSFLWASLTSISNDKAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTA 199
           LSK NG +V     A  TSIS D A  N+ V R R++     L    ++ +  D  E TA
Sbjct: 44  LSKINGVDVSLIYPALETSISKDSADLNLPVPRLRVKGKPQELAQKWAEAFPKDLVEVTA 103


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 719 GSGAIEISCGLEISQDLVSVP 657
           G GA EISC L ++++   +P
Sbjct: 423 GGGAAEISCSLAVTKEAEKIP 443


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 175 APVL--RACCFENWSG*FQSTTFHENISWS 92
           APVL  + C + N++G  Q+     N+SWS
Sbjct: 19  APVLSYKKCSYRNFNGLLQARFQSNNLSWS 48


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 35  GSEVFSFLWASLTSISNDKAPRNIL 109
           G +V SFL  SLT  + D   R IL
Sbjct: 255 GGQVISFLTESLTKYAGDPVARKIL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,759
Number of Sequences: 5004
Number of extensions: 69453
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)