Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30568
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687...    33   0.30 
01_01_0596 + 4435643-4436664,4437241-4437766                           33   0.30 
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    31   1.2  
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     30   1.6  
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329...    30   2.1  
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443...    28   6.5  
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    28   8.6  

>11_06_0233 +
           21565233-21566053,21566840-21567890,21568075-21568758,
           21568927-21569019,21571815-21571835
          Length = 889

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 335 FEGNELGNCQTGLTTVYRVKADQCDR---LWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQ 505
           F   EL + Q  L  V +V+ DQ D+   +W  DV    YD   N+  + L++ D+  ++
Sbjct: 35  FLKTELESIQAALEKVSKVQLDQLDKQIKIWARDVRELSYDIEDNIDTFMLHINDIEPNK 94


>01_01_0596 + 4435643-4436664,4437241-4437766
          Length = 515

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 290 DAPY--EPSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDR--LWVLDVGTYGYDNVT 457
           DAP   +P   L  YP   G      ++    + RVK    D+  +W+LD GT+ ++ V 
Sbjct: 205 DAPQVNDPYHNLIHYPHQHGKLNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVD 264

Query: 458 NVCPYTLNV 484
           N+  + L V
Sbjct: 265 NIGDFALFV 273


>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 332 SFEGNELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNVFDL 493
           +F  +EL + Q  +  + +V  DQ D   ++W  DV    YD   NV  + L V DL
Sbjct: 27  TFLNSELESMQAEVDKISKVPLDQLDSQIKIWARDVRELSYDIEDNVDTFMLCVDDL 83


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +2

Query: 347 ELGNCQTGLTTVYRVKADQCD---RLWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQISVN 517
           EL + Q  L  V +V  DQ D   ++W  D+    YD   N+  + L V  L   +    
Sbjct: 48  ELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRVDGLEPAKKHNF 107

Query: 518 TCYDQK 535
           TC   K
Sbjct: 108 TCLVDK 113


>05_01_0418 -
           3288844-3288990,3289256-3289332,3289578-3289653,
           3290125-3290220,3290307-3290376,3290474-3290564,
           3290753-3290822,3290908-3291044,3291313-3291465,
           3291816-3291864,3292205-3292366
          Length = 375

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 181 YQRTHCPLVSKGGGTNCSSAFLGGARYPSYFELHSTGRSI*TIP 312
           +Q T  P  +  G T+C  AF+GG  Y  Y      GR +  IP
Sbjct: 295 FQSTTFPGAATSGVTDCQQAFIGGIAYGGYAR-KIVGRVLRKIP 337


>05_06_0043 +
           25143513-25143866,25144010-25144191,25144284-25144374,
           25144452-25144568,25144922-25144976,25145008-25145093,
           25145190-25145300,25145564-25145608,25145695-25145740,
           25146078-25146152,25146902-25146971,25147128-25147437,
           25147778-25147851,25147996-25148151,25148416-25148539
          Length = 631

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 146 LEAAGSQDWCSDTRERTARWYRKVEEQI 229
           +E   S+  CS+T E+  RWY + +E++
Sbjct: 246 IETIRSEFSCSETCEKLQRWYGETDEEV 273


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 VVDWNYPDQFSKQQALRTGALIPENALPVGIERWRNK 227
           +VD    DQ  K   +R    I E+  P G ++WRNK
Sbjct: 146 LVDELLSDQHLKNYRMRKVREIQESRTPGGSQKWRNK 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,903,540
Number of Sequences: 37544
Number of extensions: 475132
Number of successful extensions: 1250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)