Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30568
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 31 0.72
SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 29 3.8
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 28 6.7
SB_2644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 8.8
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28) 28 8.8
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45) 28 8.8
SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96) 28 8.8
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1) 28 8.8
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 38 SEVFSFLWASLTSISNDKAPRNILVERGRLELPGP 142
SE FLWA+L +ND+ R + GR P P
Sbjct: 459 SECIKFLWAALAQFTNDERSRFLRFVTGRRRPPAP 493
>SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 248 VAPGIPATLNYIPLDAPYEPSPKLTPYPSFEG 343
VAP PAT+ Y +P P ++P+P++ G
Sbjct: 130 VAPSEPATIPYFAR-TEQQPGPSISPFPTWPG 160
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 305 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRLWVLDVGTYGYDNVT-NVCPYTLN 481
PSP +T YPS +LGN T + V+ ++ L V + NVT N +
Sbjct: 85 PSPNITSYPSLMTLKLGNFTTATSVVFDSTSNNATPL-VQSITAPTSPNVTINRTREANS 143
Query: 482 VFDLNTDQISVNT 520
L++ +S NT
Sbjct: 144 TMILSSTSVSYNT 156
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 305 PSPKLTPYPSFEGNELGNCQTGLTTVY 385
PSP +T YPS ELGN + + V+
Sbjct: 274 PSPNITSYPSLMTLELGNFTSATSVVF 300
>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 896
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 634 WSHRFTRWGTETRSWEISSPQLISMAPE 717
W RWG + W +S P L PE
Sbjct: 694 WGPELDRWGPDLDHWGLSGPDLDRWGPE 721
>SB_2644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 646 SDETISPSSSEKVGKRCPHSWYRYRER 566
S+ET++ S++K G+R P W R ER
Sbjct: 7 SEETLASYSTKKDGRRAPIGWGRLFER 33
>SB_15864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 649 TRWGTETRSWEISSPQLISMAPE 717
T+W TET W +P+ S PE
Sbjct: 187 TKWKTETAEWTSRTPEWTSRTPE 209
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 305 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL 415
PSP +T YPS + +GN + + V+ RL
Sbjct: 843 PSPNITSYPSLTTSAVGNFTSATSVVFDSTTPNATRL 879
>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
Length = 466
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 555 HCQHRSRYRYQL*GHLLPTFSDELGLMVSSLYSLGNRNKVLGDFKP 692
+C+ R R R + G + TF D L ++L LG++NK F P
Sbjct: 49 NCEVRQRIRINVSGEMFETFEDTLARYPTTL--LGSQNKRRRYFDP 92
>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
Length = 762
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 353 LIRCLRSSGRALISGMVHMERPVECSSK*LGYLAPPRNADEQFVP 219
L+RCLR+ + + + RP S + LG+L P + D QFVP
Sbjct: 668 LLRCLRTKK---VEEFMKLMRPF--SFRKLGFLLPVTSVDGQFVP 707
>SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)
Length = 651
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 305 PSPKLTPYPSFEGNELGNCQTGLTTVY 385
PSP +T YPS LGN T + V+
Sbjct: 319 PSPNITSYPSLMTLALGNFTTATSVVF 345
>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 473
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 305 PSPKLTPYPSFEGNELGNCQTGLTTVY 385
PSP + YPS ELGN T + V+
Sbjct: 4 PSPNIKSYPSLMTLELGNFTTATSVVF 30
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 305 PSPKLTPYPSFEGNELGNCQTGLTTVY 385
PSP + YPS ELGN T + V+
Sbjct: 382 PSPNIKSYPSLMTLELGNFTTATSVVF 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,885,694
Number of Sequences: 59808
Number of extensions: 527724
Number of successful extensions: 1394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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